RNA id: XM_039790787.1


Basic Information

Item Value
RNA id XM_039790787.1
length 5878
RNA type mRNA
GC content 0.48
exon number 27
gene id LOC120552600
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 28377079 ~ 29112293 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAATCCAGTGTAAATGAGGACAAGCTTTTCTGCAGCGTGTTCAAACATTTCCCCAGCGGAGCtgatcagagagagaggagtgtgtTTGAGTGCTGGCTCTCATAGAGGTCTATTTGAAAATGGCCCACTCACTTTTGTACTGGCCCGCCCAAAATACTATTTCAGTCTACAGAGCAGGGCGAGGAAACTGAAGGCTGAGGCAGTACTAACTTCAGATCAGAAGATGAGTgatttggaggaagaggagtatGCACTAAAGTCTGTAGTATCTAGCTGTCAGTCAGTGAAGAGTGACCGGTCCATAGATCTACCTCCAGACTTCAGTGATGAATCtggaccctcagacacaaaACTGACTCCAGATCAGAAGATGAGTGATGTCGaggtagaggaggagagagtaGAGTCTGAAGGATCTGACTGTCAGTCTACGAAGAGTGACTGGTCCAAAGGTCTTCCTGAAGACTTCAGTAAAgaacctggaccctcagacacaaaACTGACTTCAGATCAGAAGATGAGTGATTTGGAGAGGATTCTTCAATTCAGTAAAgaacctggaccctcagacacTAAAGTCCAGAACAAGAGATGGGGAGCAGAGTCTGTAGTATCTGGCTGTCAGTCTATGAAGAGTGACCGGTCCAATGATCTTCCTGAAGACTTCAGTAAAgaacctggaccctcagacacaaaACTGACTTCAGATCAGAAGATGAGTgatttggaggaagaggaggacggaGCAGAGTCTGTAGTATCTGGCTGTCAGTCTATGAAGAGTGACCGGTCCGTAGGACAGCCTCTATACTTTAGTACTgaacctggaccctcagacacaaaACTGACTTCAGATCAGAAGATGAGTgatttggaggaagaggaggacggaGCAGAGTCTGTAGTATCTGGCTGTCAGTCTATGAAGAGTGACTGGTCCATAGGACAACCTCTATACTTCAGTACTgaacctggaccctcagacacaaaACTGACTTCAGATCAGAAGATGAGTgatttggaggaagaggaggatggagcAGAGTCTGTAGAATCTGGCTGTCAGTCTATGAAGAGTGACTGGTCCGTAGGACAGCCTCTATACTTCAGTACTgaacctggaccctcagacacaaaACTGACTTCAGATCAGAAGATGAGTgatttggaggaagaggaggacggaGCAGAGTCTATAGTATCTGGCTGTCAGTCTATGAAGAGTGACTGGTCCATAGGACAACCTCTATACTTCAGTACTgaacctggaccctcagacacaaaACTGACTTCAGATCAGAAGATGAGTgatttggaggaagaggaggatggagcagagtctgtagtatctgtctgtcagtctaTGAAGAGTGACTGGTCGATGCAAGAACCTCCATACTTCAGTAAAgaacctggaccctcagacacaaaACTGACTTCAGATCAGAAGATGAGTGAtttggaggaagagaaggatggagcagagtctgtagtatctgtctgtcagtctaTGAAGAGTGACTGGTCGATGCCAGAACCTCCATACCTCAGTAATAAACCTGGACCATCAGACCCAAAAACGAGTGAGAGGAGTGATGTTTGTGAGGAGGAGCGCCCGTCCTGCTGTGCTTTGTGTCAGGACGTCCTGAAGGATCCAGTCTCTACCAGCTGTGGACTCTGGTTCTGCAGACAGTGCATCACCTCATACTGGGACCAGTCTGCTTCATCAGGGGACTCCTGCTGTCCCCAGTGTGGAGAAAGATCCAGAACAATGTACGttgttaaacataaacataagatCAGTGTGAAGGGGACATATGAACGTGTGACTGAAGGAGCTGatcaaacaggaagtggaaccCTCCTCAACAGGATCTTCACTGCGCTCTACATCACAGATGAACTGAGTGAAGAAGTTAATACCCAACATGAGGTGAGGCAGCTCGAGACAGCTTCCAAGATGAAGACCCTCCATGACTCTCCAATCGAGTGCAGCGACATCTTTAAAGCCTTACCTGaccaacagaaacacatcagaGTCGTTATGATGATCGGCGTCGCTGGCGTTGGAAAAACCTTCTCAGTGCAGAAGTTCTGTCTGGACTGGGCCGAGGGTTTGGAAAACCAAGATGTGGATCTGGTGATTCCTCTTTCCTTCAGGGAGCTGAACTTGATCAAAGATGAGCAGTACAGTCTTCTGGAGCTGCTCCGTGTTTTCCATCCATCATTACAGGAGGTCACAGCAGAGCAGCTCGCTGGCTCTAAAGTTCTCTTCATCTTTGACGGCCTGGATGAAAGCAGACTTTACCTGGATTTCAACAACAATGAGGCTGTTTCTGATGTCACACAGAAGTCATCAGTCAACGTGCTGTTGACAAACCTCATCCAGGGGAAGCTGCTTCCCTCGGCTCTCGTCTGGATAACTtcccgacctgcagcagccaatcagatccctcctgcgtGTGTTGACAGGGTAACAGAAGTACGAGGCTTCACTGACgaccagaaggaggagtacttcaggaagagagtcagtgatgaagagctgtccagcagaatcatctcccacatcaagacctccaggagcctccacatcatgtgtctgatcccagtcttctgctggatcactgctacagttctggaccaCATGTTGACTACAGACCagagaggagagctgcccaagaccctgactgacatgtactcacacttcctgctggttcagacaaagaggaagaagctCAAGTATGCTGAGGGACATGAGACGAGTCCTCAGGAGCTGACGGAGGCTGACAGGGAAGTTCTTCTGAAGCTGGGGAGGCTGGCGTTTGAACAGCTGGAGAAAGGAAACATCATGTTCTACCAAGAAGACCTGGAGCGCTGTGGTCTGGATGTCACAGAGGCCTCGCTGTACTCAGGAGTTTGTTCAGAGATCTTCAAAAGAGAGAGTGTGATCTTCCAGAAAACAGTCTACTGCTTCGTTCATCTGagcgttcaggagtttctggctgcagtctacctgttccactgttacaccaacaggaacacacaggtaCTGGAGGACTTCCTGGGGAAAGACAACTATGTTTATTCATCTCTGGATGTCTTCCTGAAGAGAGCCATGGAGAAATCCCTTGAAAGTAAAAATGGCCACCTGGACCTGTTTGTCCGCTTCCTTCATGGCCTCTCTCTGAAGTCCAACCAGAGACTCTTAGGAGGCctgctgggtcagacagacaacagtccAGAAATCATCCAGAGAGCCATCAACAACCTGAAGGAGATGAACAGTGATGGGATCTCTCCTGACAGAAGCATCAACATCTTCCACTGTCTGACGGAGATGAACGACCACTCAGTCCATCAGGAGATCCAAGAGTTCCTGAAGTCAGAGAACAGATCAGAGAAGGAACTCTCTGAGATCCACTGCTCAGCTCTGGCCTACATGCTGCAGATGTCAGAGGAGGTTCTGGATGAGTTGGACCTGAGTCAGTACAACACATCACAGGAGGGAAAACtgagactgattccagctgtgaGGAACTGCAGAAAGGCTCGATTGGTGCGCTGTggtttgtcagagatcagctgtgctgctctggcctcagctctgaagtccaacccctcccatctgaaagAGCTGGACCTGACAGAGAACTACAACCTGAatgattcaggagtgaagcagctGTGTGCTGGATTGGAGAGTCCaaactgtagactggagactctgagATTGGAGAGCTGCggtttgtcagagatcagctgtgctgctctggcctcagctctgaagtccaacccctcccatctgaaagAGCTGGACCTGGGCAACAACAACCTggaggattcaggagtgaagcagctGTGTGCTGGATTGGAGAGTCCaaactgtagactggagactctgagattgTGGAGCTGCggtttgtcagagatcagctgtgctgctctggtctcagctctgaagtccaacccctcccatctgaaagagctggacctgaggGGCAACAACCTGAAGGAGTCAGACGTGAAGCAGCTGTGTGATCTGAAGGAGAGTCCAgactgtagactggagactctggAGATGGATGGCAGAGTATACAGGGCTGCACCTGACAGACATAAAGGACATCCGTCCACATCGAAGACAAACCTTGATGTGTCTGAGGACAGAAGAGAGGATCAGCTGAGTCCTGATGATCCAGAGAAgttgaagcagcagcagtttgTGGGAGGAGAGGCTCCCAATACAAATGACACTATGAGTTTCACACCTGAGCTGCTGACTGAGTCTGGAAAGACTTCATACAGGTTCAGGTGTCCTGGTCCAGGTGGGTTCCAGTGTGCTTTGACTGGACTGGTGTTTGTTACGACTCAGAAGGCGGAGCTGCTGTACAACACTGTCCAATGGGATGAGAGCCTCCTCCAATCAGCTGGCAGGATGGCTGCAGGGCCGCTGTACGACATCAAGTGTTCAGAGAAGGCTGCTGTCTGTCAGCTCCACTTTCCACACTGTGAAATCATAGATGCTCCGCTGCCTGATGGCCTGTTGTCTGTCGTCCACATCACTGATGATGGGATGAGCATCCTCGAGCCGCTGGAGATTACTGACACTCACGTGGTTGTAAATGTCCCTCACCTCTCTGTCCTTGGCCTGATCTGGGATGTAGTTAAAAGGTTGTGGACGATACCTGTCAGCGGCCAAATTATGCTGTTTCTCGGACCACTAAACCCAGCAACACAGAGGCAAAACCTCAATGTGCTTCTCCTGCCGAGAAACATCCCTCTGAGCACGGTGAGCGAACAATATCAACAATCTAGGAACATCCGGGTTCCTTCCAAATGTAAACTCATCAAAGATCAAAGCTACACCGTCCAATGTCCTCAGGCTGTGAAAATACAGCCAAAGAAAGCAGATTTTGACCTGGAGTTTGGACCAAACTACGACTCAACGTTTGAGATCCGCCTGCCTATAAACACACCAGAAGTGACTTTAAGAGTCCAAGATGAAGGACAGAGCGTCTGGGAGCATGACGTAGAACTGATTGTTCCAACTGGGCCAAATCCACGGAGGAATGAGCCAGCAGAGGACAGTGATCCCCCAGAAGACATGCTGAGGCAAGTTCGGACACAGTTTGTAGAGCGAGTGTCTGATCCAGTTCTGAACCAGCTTCTGGATAAACTCCTTGAGCGTGGTGTTATAACTGATGAGGAAATGCAGTCAGCCAGAACACAAGGCAGAGCAGACAAAGCTCGAGACGTGATGGACACGGTGAGAAGAAAAGGACGAGGAGCCAGCTCAGTTCTGATCTCTGTTCTCCATGAGGTGGATCCAGTCCTTTCCAGAGAGCTGACATTAAACTGAAGAACCAAACtgtggagagagatgatgaATCTCTCCAATAACTGAGTGTTACACATGATTACTGATTTGTAGTTTCAGCCACTAGATGGAGGCAGAACTTCACTGATAGACAAACAAGAAGCAAATAATTGAGAAAGATTTCTGAGTGATGATTGAACACCTGCTGGTTCAAGAGATACTGGTTGGTCATTTACTCATCCTCTACAGCCTCTTATGTCATCAAACAGCCTCTGATGTCATCAAACAGATGCTAAATGCAGCGTGGCTTTTTCTGGCTCAGAACCATATTTTGTCTTTTACATGTTTTCTTGGGGTGACACAAATCTTCAGCGGTATTCAGAGAAAAGGAACAATAGCTGTTTCGCCTGTTTTTGATGCTGAATGTTTCAACCGACCAACTGGGAATCACTTATAATCATATatttcaacccagtctcacggcagttcatgaaatggtcacgtaattGTAATGTATTGAGTCATGACAAATAAACTTACCTAACACGTTTATCTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU302831 lncRNA downstream 44887 28207446 ~ 28332192 (-) False G223686
TU302939 lncRNA downstream 49385 28313890 ~ 28327694 (-) True G223757
TU302934 lncRNA downstream 60079 28265465 ~ 28317000 (-) True G223754
TU302865 lncRNA downstream 74111 28251425 ~ 28302968 (-) False G223697
TU302864 lncRNA downstream 74111 28301778 ~ 28302968 (-) True G223697
TU303084 lncRNA upstream 30635 29142928 ~ 29145651 (-) True G223847
TU303088 lncRNA upstream 51663 29163956 ~ 29165000 (-) True G223851
TU303090 lncRNA upstream 52353 29164646 ~ 29167677 (-) True G223852
TU303110 lncRNA upstream 225960 29338253 ~ 29339662 (-) True G223870
TU303113 lncRNA upstream 236281 29348574 ~ 29348985 (-) True G223873
XM_039790736.1 mRNA downstream 21432 28303334 ~ 28355647 (-) True LOC120552567
XM_039790778.1 mRNA downstream 676748 27694340 ~ 27700331 (-) False LOC120552596
XM_039790779.1 mRNA downstream 676748 27694340 ~ 27700331 (-) False LOC120552596
XM_039790780.1 mRNA downstream 676748 27694340 ~ 27700331 (-) True LOC120552596
XM_039790781.1 mRNA downstream 676748 27694540 ~ 27700331 (-) False LOC120552596
XM_039790743.1 mRNA upstream 12921 29125214 ~ 29147661 (-) True LOC120552571
XM_039790744.1 mRNA upstream 12921 29125214 ~ 29147658 (-) False LOC120552571
XM_039790769.1 mRNA upstream 39141 29151434 ~ 29161971 (-) True LOC120552587
XM_039790764.1 mRNA upstream 188651 29300944 ~ 29319934 (-) True LOC120552583
XM_039790811.1 mRNA upstream 490809 29603102 ~ 29610341 (-) False dnph1
TU302839 other downstream 44887 28207446 ~ 28332192 (-) False G223686
TU302917 other downstream 181654 28194528 ~ 28195425 (-) True G223746
TU302918 other downstream 181654 28194528 ~ 28195425 (-) False G223746
TU302806 other downstream 461246 27897498 ~ 27915833 (-) False G223681
TU302801 other downstream 461246 27914603 ~ 27915833 (-) True G223681
TU303066 other upstream 188397 29300690 ~ 29305614 (-) False LOC120552583
TU303131 other upstream 367516 29479809 ~ 29543351 (-) False LOC120552608
TU303133 other upstream 368325 29480618 ~ 29490705 (-) False LOC120552608
TU303182 other upstream 438102 29550395 ~ 29563368 (-) True G223911
TU303168 other upstream 625323 29737616 ~ 29746456 (-) True G223897

Expression Profile