RNA id: XM_039790791.1


Basic Information

Item Value
RNA id XM_039790791.1
length 4012
RNA type mRNA
GC content 0.48
exon number 14
gene id LOC120552613
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 29900410 ~ 29924741 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTCACTTTCCAGAGGCTGATGTGTCGCAGCTTTTCCACACCGTGTGGAGCTCCAGCTGAAGGACCCATCAGAAACCAGACCCTGCTGAACCTGATCCTGAACCtcaacccagctgtgtgtccatgaagtGTGACCGGTCCATGGATCCATAACTACttaagagagaggaggagaattaaaatggagaggaggagaatgGAAATGGAGAGGAAGCAAATGGAAATGGAGAGGAGAAGACGGAGGACCAGACCAGGGTcagaacctgaacccagctgtgtgtcctccAAGAGCAACCGGTCAAAAGAGGATTGTATTAATTTTAAACGTGTTTCTGACAAAAAaCTATCTGCTGATAGAAGGATCCAGCAGCAGAGAACAGAGtctcctgaacctgaacccagctgtgtgtccttcaagAGCGACCGGTCATACAATTTCTTTATAGATTTTAAACAAAGACATCCATCTGACAGAAAagtggaccaggagagctctgaggttcccagtggtcagtctgcccagcagcatccaacacacctggactccatatttatgctgctggaggaggacatcgtcacttttgtgaagaacgagctgaagaagatccagaaggttctgagtccagattacccagaatTCTCAAAGAGTCAATGGAaggatgaggatgaagagcagaggaggagcagagaggcatttctgaagatcacactgcacttcctgaggagaatgaagcaggaTGAGCTGGCTGACCGTCTGCAGAGCAGAAGTCCAGCTGGAGTCTGCCGACGTAAACTCAAATCTAACCTAAACaagaagttccagtgtgtgtttgaggggattgctaaagcaggaaaccaaacccttctgaatcagatgttcacagagatctacatcacaaagggagggactgcagaggtcaatgatgaacatgagatcagacagattgaaatagcatccaggaaaccagacagccaagaaacaacaatcagacaaGAATACATCTTTAAAACTccacctggaagagatgaaccaatcagaacagtgatgacaaagggagtggctggcatcgggaaaacagtcttaacacagaagttcactctggactgggctgaagacaaagccaaccaggacatccaattcacatttccattcaccttcCGAGAGCTGAATCTGCTGAAAGAGGAAAAGTTCAGCTTGGTGCAACTTGTTGATCgcttctttagtgaaaccaaagacgcaggaatctgcaggtttgaagaggttgtattcatctttgacggtctggatgagtgtcgactttctctggacttcctcaacactgagatcctgactgatgttacagagtccacctcagtggatgtgctgctgacaaacctcatcagggggaaactgcttccctctgctcgactctggataaccacacgacctgcagcagccaatcagatccctcctgagtgtgttgacatggtgacagaggtcagagggttcactgacccacagaaagaagagtacttcaggaagagattcacAGATGAGGAGAaggccagcagaatcatctcccacatcaagacatcacgaagcctccacatcatgtgccacatcccagtcttctgctggatcactgctacagttctcgAGGAcgtgttgaagaccagagatggaggagagctgcccaaaaccctgactgagatgtacatccacttcctggtggttcagaCCAAATTGAAGAACATCAAATATCATGGAAAATCTGGGATAGATCAACACTGGAGTCCAGAGAGCAGGAAGATGATcgagtctctgggaaaactggcttttgagcagctgcagaaaggcaacctgatcttctatgaatcagacctgacagagtgtggcatcgatatcagagcagcgtcagtgtactcaggagtgttcacacagatctttaaagaggagagaggactacaccaggacaaggtgttctgcttcgtccatttgagtgttcaggagtttctggctgctcttcatgtccatctgacattcaccaactctggagtcaacctgctgtcagGAAAACAAACATCATCAACACGTAtctaccagagtgctgtggacaaggccgtagagagtccaaatggacacctggacttgttcctccgcttcctcctgggtctttctctgcagaccaatcagaaaCTCCTACAAGGTCTGATAATGcagacaggaagtagctcaGAGACCAATCAGAAAACAGTCAAGTACATCAAGAAGAAAATCAGTGAGAgtctgtctgcagagagaagcatcaatctgttccactgtctgaatgaactgaatgattgtTCTCTAGTGGAGCAGATCCAACAGTCCCtgagttcaggaagtctctccacagataaactgtctcctgctcagtggtcagctctggtcttcatcttactgtcatcagaaaaagatctggacgtgtttgacctgaagaaatactctgcttcagagaaagctcttctgaggctgctgccagtggtcaaagcctccaacaaagctctactgagtggctgtaacctgtcagacagaagctgtgaagctctgtcctcagttctcagctcccagtcctctagtctgagagagctggacctgagtaacaacgacctgcaggattcaggagggaagctgatctctgttggactgaatagtccacactgcacactggagactctcagactgagtggctgtaacctgtcagagagaagctgtgaagctctgtcctcagttctcagctcccagtcctctagtctgagagagctggacctgagtaacaacaacctgcaggattcaggagggaagctgatctctgttggactgaagagtccatactgcacactggagactctcagACTGAGTGTCTGTaagctgtcagagagaagctgtgaagttctgtcctcagttctcagctcccagtcctctagtctgagagagctggacctgagtagcaacaacctgcaggattcaggagggaaacTGATCTCTGTTGGACTGAATAGTCCACACTGtacactggagactctcagtctgtcaggctgtctgatctcagaggaaggctgttcttctctggtctcagctctgagctccaacccctcccatctaagcgagctggacctgagctatAATCATCCAGGTGACTCAGCAGTGAAGCTACTGTCAGCGGGACTGGAGGATCctctctggagactggacactctcagggtggagcctgctggagtcagatggttgacaccaggtctgaggaagtattcctgtgaactcacactggacacaaacacagtgaacagaaacctcaaactgtctgacaacaacaggaaggtgacataTGTGAAGgaggatcagccatatcctgatcatccagagaggtttgactactatcctcagctgctgtgtagagatggtctgactggtcgctgttactgggaggtcgagaggagaggaggggtttatatatcagtgagttacagaggaatcagcaggAGAGGAAACAGTGCTGACTGTTGGTTTGGatgtaatgatcagtcctggagtctgaaCTGCTCTGATGGTGGTTACTCTGTCTGTCACAATAAGAGAGAAACAcccatctcctcctctgtctctagtagagtagcagtgtatgtggacgttcctgctggctctctgtccttctacacagtctcctctgactcactgatccacctccacaccttcaacaccacattcactcagcctctttATCCTGGGTTTAGGTTTAGGGTCTGGTCtcctggttcctcagtgtctctgtgttcactgtaggacggagagtctcctcctgtttctcactgctgatcagttgagtctgtacaggatcacacttacagaaataGGTCAGGTTATTGTTATaaactaatgaatgaactttgtataaaataattcagaatgattgaaCAGATACCTcgtgaacattgtaaacttcttccacttccagtcctttaaagatggaagctgggatcatgaaattgtaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303237 lncRNA downstream 34622 29837146 ~ 29865788 (-) False G223948
TU303233 lncRNA downstream 34622 29864537 ~ 29865788 (-) False G223948
TU303236 lncRNA downstream 34622 29864537 ~ 29865788 (-) True G223948
TU303206 lncRNA downstream 57177 29743948 ~ 29843233 (-) True G223930
TU303174 lncRNA downstream 99340 29753130 ~ 29801070 (-) True G223903
XR_005638054.1 lncRNA upstream 22330 29947071 ~ 29948139 (-) True LOC120552633
TU303290 lncRNA upstream 73093 29997834 ~ 30037330 (-) False G223974
TU303291 lncRNA upstream 73374 29998115 ~ 30037330 (-) False G223974
TU303288 lncRNA upstream 111036 30035777 ~ 30086423 (-) True G223974
TU303300 lncRNA upstream 114991 30039732 ~ 30120856 (-) True G223983
XM_039790804.1 mRNA downstream 4815 29861802 ~ 29895595 (-) False eci2
XM_039790803.1 mRNA downstream 4817 29861802 ~ 29895593 (-) True eci2
XM_039790813.1 mRNA downstream 43605 29850963 ~ 29856805 (-) False LOC120552628
XM_039790968.1 mRNA downstream 150151 29746508 ~ 29750259 (-) True inhbaa
XM_039790967.1 mRNA downstream 227638 29629305 ~ 29672772 (-) True LOC120552739
XM_039790800.1 mRNA upstream 371741 30296482 ~ 30333279 (-) True xylb
XM_039790806.1 mRNA upstream 455368 30380109 ~ 30386006 (-) True crygn2
XM_039790795.1 mRNA upstream 480442 30405183 ~ 30420550 (-) True LOC120552615
XM_039790797.1 mRNA upstream 480442 30405183 ~ 30420549 (-) False LOC120552615
XM_039790796.1 mRNA upstream 480442 30405183 ~ 30420549 (-) False LOC120552615
XR_005638049.1 other downstream 43438 29851546 ~ 29856972 (-) False LOC120552628
XR_005638048.1 other downstream 43438 29851546 ~ 29856972 (-) False LOC120552628
TU303248 other downstream 48342 29850656 ~ 29852068 (-) True LOC120552628
TU303168 other downstream 153954 29737616 ~ 29746456 (-) True G223897
TU303182 other downstream 337042 29550395 ~ 29563368 (-) True G223911
XR_005638047.1 other upstream 482215 30406956 ~ 30420547 (-) False LOC120552615
TU303357 other upstream 536761 30461502 ~ 30465869 (-) False G224031
XR_005638046.1 other upstream 550577 30475318 ~ 30493379 (-) False LOC120552614
TU303394 other upstream 708005 30632746 ~ 30681582 (-) True G224051
TU303612 other upstream 1286020 31210761 ~ 31211360 (-) True G224195

Expression Profile