RNA id: XR_005638046.1


Basic Information

Item Value
RNA id XR_005638046.1
length 2685
RNA type transcript
GC content 0.49
exon number 7
gene id LOC120552614
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 30446866 ~ 30493379 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTTAGTGAGACCAGaagagagcaggaggaggaaactgAAGGCTGAGGCAGGACTGACTTCAGATCAGAAGATGAGTgatttggaggaagaggaggatggagcAGAGTCTGTAGTATCTGGCTGTCAGTCTATGAAGAGTGACCGGTTGATGTCACACCCTCCAGACTTCAACAATgaacctggaccctcagacacaaaACTGACTTCAGATCAGAAGATGAGTgatttggaggaagaggaggacggaGCAGAGTCTGTAGTATCTGGCTGTCAGTCTATGAAGAGTGACCGGTCCAGAGATTATCCTCATAACTTCAGTAAAgaacctggaccctcagacacaaaaaagagggagaggagtgATGTTTGTGAGGAGGATCAGCCGTCCTGCTGTGCTTTGTGTCAGGACGTCCTGAAGGATCCAGTCTCTACCAGCTGTGGACACTGGTTCTGCAGACAGTGCATCACCTCATACTGGGACCAGTCTGCTTCATCAGGAGACTCCTGCTGTCCCCAGTGTGGAGAAAGATCCAGAACAATGTAcgttgttaaatataaacagaaGATCAGTGTGAAGGGGACATATGAACGTGTGACTGAAGGAGCTGATCAAACAGGAAGTGGATCCCTCCTCAACAGGATCTTCACTGCGCTCTACATCACAGATGAACTGAGTGAAGAAGTTAATACCCAACATGAGGTGAGGCAGCTCGAGACAGCTTCCAAGATGAAGACCCTCCATGACTCTCCAATCAAGTGCAGCAACATCTTTAAAGCCTTACCTGACCAACAGAAACAAATCAGAGTCGTTATGATGATCAGCGTCGCTGGCGTTGGAAAAACCTTCTCAGTGCAGAAGTTCTGTCTGGACTGGGCCGAGGGTTTGGAAAACCAAGATGTGGATCTGGTGATTCCTCTTTCCTTCAGGGAGCTGAACTTGATCAGAGATGAGCAGTACAGTCTTCTGGAGCTGCTCCGTGTTTTCCATCCAACATTACAGGAGGTCACAGCAGAACAGCTCGCTGGCTCTAAAGTTCTCTTCATCTTTGACGGCCTGGATGAAAGCAGACTTTACCTGGATTTCAACAAGAGGAAGGTTGTTTCTGATGTCACACAGAAGTCATCAGTCAACGTGCTGTTGACAAACCTCATCCAGGGGAAGCTGCTTCCCCTGGCTCTCATCTGGATAACTtcccgacctgcagcagccaatcagatccctcctgcgtGTGTTGACAGGGTAACAGAAGTACGAGGCTTCACTGATgaccagaaggaggagtacttcaggaagagagtcagtgatgaagagctgtccagcagaatcatctcccacatggAAACATCCAggagcctccacatcatgtgtctaatcccagtcttctgctggatcactgccaCAGTTCTGGACCACATGTTGACTACAGACCagagaggagagctgcccaagaccctgactgacatgtactcacacttcctgctggttcagacaaagaggaagaagcaGAAGTATGCTGAGGGACATGAGACGAGTCCACAGGAGCTGACCGAGGCTGACAGGGAAGTTCTTCTGAAGCTGGGGAGGCTGGCGTTTGAACAGCTGCAGAAAGGAAACATCATGTTCTACCAAGAAGACCTGGAGCGCTGTGGTCTGGATGTCACAGAGGCCTCGATGTACTCAGGAGTTTGTTCAGAGATCTTCAAAAGAGAGAGTGTGATCTTCCAGAAAACAGTCTACTGCTTCGTTCATCTGagcgttcaggagtttctggctgcagtCTACATGTTCCACTGTTACACCAACAGGAACTCAGAGGTACTGAAGGACTTCCTAGGAGAAGACTTCCTGGGACCAGACATCAAGCACAGGGACTCAAACCCAAAGACTTTTCTCAAGAAGATTTCTAAGTATTTTGTAAAGAAAGATGACATTTTACCCATCCAAGATTACCCATCCCTGGATGTCTTCCTGAAAAGAGCCATGAAGAAATCCCTGAGGAGTAAAAATGGCCACCTGGACCTGTTTGTCCGCTTCCTTCATGGCCTCTCTCTGGAGTCCAACCAGAGACTCTTAGGAGGCctgctgggtcagacagacaacagtccAGAAATCATCCAGAGTGCTATCAACAAcctgaagaagatgaagaagaccAATATCTCTACTGACAGAAGCATCAACATCTTCCACTGTCTGACGGAGATGAACGACCACTCAGTCCATCAGGAGATCCAAGAGTTCCTGAAGTCAGATAACAAATCAAAGAAGAGACTCTCTGTGATCCACTGCTCAGCTCTGGCCTACATGCAGCAGATGTCAGAGGAGGTTCTGGATAAGTTGTACCTGAAGAATTACAACACATCACGGGAGGGACGACTGAGACTGATTCCAGTTATTGGGTTCATGTggtttgtcagagatcagctgtgcttctctggcctcagctctgacgtcaaacccctcccatctgagggAGCTGGATATGTGGGGCAACCGCAACCTGAatgattcaggagtgaagctgctgtgtGCTGGATTGGGGAGTCCAAACTGTAAACTGGAGACTCTGAGattgGAGAGCTGTGGTTTGTCAGAtatcagctgtgcttctctggcctcagctctgaagtacaacccctcccatctgagagccCTGGACCTTGGTGACAACGAGAAGctgaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303365 lncRNA downstream 9449 30397876 ~ 30465869 (-) False G224031
TU303361 lncRNA downstream 31428 30441333 ~ 30443890 (-) False G224031
XR_005638053.1 lncRNA downstream 75389 30397913 ~ 30399929 (-) True LOC120552632
TU303334 lncRNA downstream 97310 30375412 ~ 30378008 (-) True G224016
TU303351 lncRNA downstream 106816 30366857 ~ 30368502 (-) True G224025
TU303387 lncRNA upstream 37096 30530475 ~ 30584074 (-) True G224044
TU303410 lncRNA upstream 221534 30714913 ~ 30719218 (-) True G224065
TU303429 lncRNA upstream 306589 30799968 ~ 30800263 (-) True G224081
TU303430 lncRNA upstream 306589 30799968 ~ 30800263 (-) False G224081
TU303417 lncRNA upstream 307235 30800614 ~ 30824856 (-) True G224069
XM_039790795.1 mRNA downstream 54768 30405183 ~ 30420550 (-) True LOC120552615
XM_039790797.1 mRNA downstream 54769 30405183 ~ 30420549 (-) False LOC120552615
XM_039790796.1 mRNA downstream 54769 30405183 ~ 30420549 (-) False LOC120552615
XM_039790798.1 mRNA downstream 54769 30407058 ~ 30420549 (-) False LOC120552615
XM_039790806.1 mRNA downstream 89312 30380109 ~ 30386006 (-) True crygn2
XM_039790971.1 mRNA upstream 86112 30579491 ~ 30598932 (-) True LOC120552744
XM_039789911.1 mRNA upstream 303805 30797184 ~ 30806336 (-) True LOC120552139
XM_039790834.1 mRNA upstream 524451 31017830 ~ 31020186 (-) False LOC120552646
XM_039790832.1 mRNA upstream 524451 31017830 ~ 31020186 (-) False LOC120552646
XM_039790831.1 mRNA upstream 524451 31017830 ~ 31020186 (-) True LOC120552646
TU303357 other downstream 9449 30461502 ~ 30465869 (-) False G224031
XR_005638047.1 other downstream 54771 30406956 ~ 30420547 (-) False LOC120552615
XR_005638049.1 other downstream 618346 29851546 ~ 29856972 (-) False LOC120552628
XR_005638048.1 other downstream 618346 29851546 ~ 29856972 (-) False LOC120552628
TU303248 other downstream 623250 29850656 ~ 29852068 (-) True LOC120552628
TU303394 other upstream 139367 30632746 ~ 30681582 (-) True G224051
TU303612 other upstream 717382 31210761 ~ 31211360 (-) True G224195
TU303705 other upstream 806644 31300023 ~ 31301032 (-) True G224245
TU303660 other upstream 841427 31334806 ~ 31337397 (-) False LOC120551970
TU303782 other upstream 1122691 31616070 ~ 31665371 (-) True G224289

Expression Profile