RNA id: XR_005638047.1


Basic Information

Item Value
RNA id XR_005638047.1
length 2846
RNA type transcript
GC content 0.50
exon number 8
gene id LOC120552615
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 30405183 ~ 30420550 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

acaaacagacacacacacacacagataaactcAGTTGGTTTCCTGTAACTGGAGAATGGGAGGAGCAGATCAGGTCcatgagaagaggaagaggtgaGTCAGTCGAGACTCCATTAGAGTGGACAGAAGAGCGGGAGGAGGAAACTGAAGGCTGAGGCAGGACTGACTTCAGATCAGAAGATGAGTGATttcgaggaagaggaggatggagcAGAGTCTGTAGTATCTGGCTGTCAGTCTATGAAGAGTGACCAGTCCAAACATGAACCTCTGACCTTCAGTAAAgaacctggaccctcagacacaaaACTGACTTCAGATCAgaagatggaggaagaggaggatggagcAGAGTCTGTAGTATCTGGCTGTCGGTCTATGAAGAGTGACTGGTCCAAACATGAACCTCTGACCTTCAGTACTgaacctggaccctcagacacaaaaaagaggaagaggagtgatGTTTGTGAGGAGGAGCAGCCGTCCTGCTGTGCTTTGTGTCAGGACGTCCTGAAGGATCCAGTTTCTACCAGCTGTGGACACTGGTTCTGCAGACAGTGCATCACCTCATACTGGGACCAGTCTGCTTCATCAGGAGACTCCTGCTGTCCCCAGTGTGGAGAAAGATCCAGAACAATGTACAttgttaaacataaacataagatCAGTGTGAAGGGGACATATGAACGTGTAAATGAAGGAACTGatcaaacaggaagtggaaccCTCCTCAACAGGATCTTCACTGCGCTCTACATCACAGATGAACTGAGTGAAGAAGTTAATACCCAACATGAGGTGTGGCAGCTCGAGACAGCTTCCAAGATGAAGACCCTCCATGACTCTCCAATCAAGTGCAGCGACATCTTTAAAGCCTTACCTGaccaacagaaacacatcagaGTCGTTATGATGATCGGCGTCGCTGGCGTTGGAAAAACCTTCTCAGTGCAGAAGTTCTGTCTGGACTGGGCCGAGGGTTTGGAAAACCAAGATGTGGATCTGGTGATTCCTCTTTCCTTCAGGGAGCTGAACTTGATCAAAGATGAGCAGTACAGTCTTCTGGAGCTGCTCCGTGTTTTCCATCCATCATTACAGGAGGTCCCAGCAGAACAGCTCGCTGGCTCTAAAGTTCTCTTCATCTTTGACGGCCTGGATGAAAGCAGACTTTACCTGGATTTCAACAACAATGAGGCTGTTTCTGATGTCACACAGAAGTCATCAGTCAATGTGCTGTTGACAAACCTCATCCATGGGAAGCTGCTTCCCTCGGCTCTCGTCTGGATAACTtcccgacctgcagcagccaatcagatccctcctgcgtGTGTTGACAGGGTAACAGAAGTACGAGGCTTTACTGACgaccagaaggaggagtacttcaggaagagagtcagtgatgaagagtccagcagaatcatctcccacatcaagacctccaggagcctccacatcatgtgtctgatcccagtcttctgctggatcactgctacagttctggaccaCATGTTGACTACAGACCagagaggagagctgcccaagaccctgactgacatgtactcacacttcctgctggttcagacaaagaggaagaagctCAAGTATGCTGAGGGACATGAGACGAGTCCACAGGAGCTGACGAAGGCTGACAGGGAAGTTCTTCTGAAGCTGGGGAGGCTGGCGTGTGAGGAGCTGGAGAAAGGAAACATCATGTTCTACCAAGAAGACCTGGAGCGCTGTGGTCTGGATGTCACAGAGGCCTCGCTGTACTCAGGAGTTTGTTCAGAGATCTTCAAAAGAGAGAGTGTGATCTTCCAGAAAACAGTCTACTGCTTCGTTCATCTGagcgttcaggagtttctggctgcagtctacctgttccactgttaCACCAACAGGAACACAGAGGTACTCAGGGTGTTCCTGGGAGAAGACTACGTTGATTCATCCCTGGATGTCTTCCTGAAGAAAGCCATGGAGAAATCCCTTGAAAGTAAAAATGGCCACCTGGACCTGTTTGTCCGCTTCCTTCATGGTCTCTCTCTGGAGTCCAACCAGAGACTCTTAGGAGGCCTGTTGgatcagacagacaacagtccAGAAATCATCCAGAGAGCCATCAACCAcatgaagaagatgaagaagaccAATATCTCGCCTGACAGAAGCATCAACATCTTCCACTGTCTGATGGAGATGAACGACCACTCAGTCCAGCAGGATATCCAAAAGTTCCTGAAGAAGAGATCAAAAAAGAGACTCTCAGTGATCCACTGCTCAGCTCTGGCCTACATGCTGCAGATGTCAGAGGAGGTTCTGGATGAGTTGTACCTGAAGAATTACAACACATCACAGGAGGGACGACtgagactgattccagctgtgaGGAACTGCAGAAGGGCTCGATTGGGTTCGTGTggtttgtcagagatcagctgtgcttctctggcctcagccctgaagtccaacccctcccatctgagagagctgcaTATGTGGGGCAACCGCAACCTGAatgattcaggagtgaagctgctgtgtGCTGGAATGGAGAGTCCAAACTGTAGACTGGAGATTCTGAActctgaagtccaacccctcccatctgagagagctggaccttgGTGACAACGAGAAGctgaaggattcaggagtgaaacTGCTGTGTGGTTTTCTGGAAAGTCCAAACTGTGGACTGGAGACTCTGATattgTATAACTGCggtttgtcagagatcagctgtgctcctctggcctcagctctgaagtccaacccctcccatttgagagagctggacctgagggGCAACGACCTGAAGGAGTCAGACGTGAAGCAGCTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638053.1 lncRNA downstream 7027 30397913 ~ 30399929 (-) True LOC120552632
TU303334 lncRNA downstream 28948 30375412 ~ 30378008 (-) True G224016
TU303351 lncRNA downstream 38454 30366857 ~ 30368502 (-) True G224025
TU303332 lncRNA downstream 108105 30298424 ~ 30298851 (-) True G224015
TU303328 lncRNA downstream 195110 30211161 ~ 30211846 (-) True G224011
TU303361 lncRNA upstream 20786 30441333 ~ 30443890 (-) False G224031
TU303367 lncRNA upstream 49267 30469814 ~ 30578444 (-) False G224031
TU303362 lncRNA upstream 72655 30493202 ~ 30578444 (-) True G224031
TU303387 lncRNA upstream 109928 30530475 ~ 30584074 (-) True G224044
TU303410 lncRNA upstream 294366 30714913 ~ 30719218 (-) True G224065
XM_039790806.1 mRNA downstream 20950 30380109 ~ 30386006 (-) True crygn2
XM_039790800.1 mRNA downstream 73677 30296482 ~ 30333279 (-) True xylb
XM_039790791.1 mRNA downstream 482215 29900410 ~ 29924741 (-) True LOC120552613
XM_039790804.1 mRNA downstream 511361 29861802 ~ 29895595 (-) False eci2
XM_039790803.1 mRNA downstream 511363 29861802 ~ 29895593 (-) True eci2
XM_039790793.1 mRNA upstream 26319 30446866 ~ 30493379 (-) True LOC120552614
XM_039790794.1 mRNA upstream 29541 30450088 ~ 30493379 (-) False LOC120552614
XM_039790792.1 mRNA upstream 53522 30474069 ~ 30493379 (-) False LOC120552614
XM_039790971.1 mRNA upstream 158944 30579491 ~ 30598932 (-) True LOC120552744
XM_039789911.1 mRNA upstream 376637 30797184 ~ 30806336 (-) True LOC120552139
XR_005638049.1 other downstream 549984 29851546 ~ 29856972 (-) False LOC120552628
XR_005638048.1 other downstream 549984 29851546 ~ 29856972 (-) False LOC120552628
TU303248 other downstream 554888 29850656 ~ 29852068 (-) True LOC120552628
TU303168 other downstream 660500 29737616 ~ 29746456 (-) True G223897
TU303182 other downstream 843588 29550395 ~ 29563368 (-) True G223911
TU303357 other upstream 40955 30461502 ~ 30465869 (-) False G224031
XR_005638046.1 other upstream 54771 30475318 ~ 30493379 (-) False LOC120552614
TU303394 other upstream 212199 30632746 ~ 30681582 (-) True G224051
TU303612 other upstream 790214 31210761 ~ 31211360 (-) True G224195
TU303705 other upstream 879476 31300023 ~ 31301032 (-) True G224245

Expression Profile