RNA id: XM_039790826.1


Basic Information

Item Value
RNA id XM_039790826.1
length 1778
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC120552642
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 31098066 ~ 31102487 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaaaacttttttctcctttttctccaCTTTACCCGTGTGAGCGGGGACCCCCCCGAAAGGGGAAGTGGTGGCCTCCTCTTTAACCGTGCGGTTTGCAGCGACCCCGGGGACCGACCTGACAAGCAGACCTTTGATCCTCCAGCTGAGCGGAAACCTCTGTGACCGAGGCAGAAGTGGCTGTCTGAGTgaaacacagcTCCACCACTGCATGCTGCTACTGGTAACCTGGTGATGCTGACTGCTGCTAAGGAGATGGCTACTGGTAACCTGGTGATGCTGACTGCTGCTGAGGAGATGGCTACTGGTAACCTGGTGATGCTGACTGCTGCCGAGGAGATGGCTACTGGTAACCTGGTGATGCTGACTGCTGCTGAGGAGATGGCTACTGGTAACCTGGTGATGCTGACTGCTGCTGAGGAGATGGCTACTGGTAACCTGGTGATGCTGACTGCTGCCGAGGAGATGGCTACTGGTAACCTGGTGATGCTGACTGCTGCTGAGGAGATGGCTACTGGTAACCTGGTGATGCCGACTGCTGCTAAGGAGATGGCTACTGGTAACCTGGTGATGCCGACTGCTGCTAAGGAGATGGCTACTGGTAACCTGGTGATGCTGACTGCTGCTAAGGAGATGGCTACTGGTAACCTGGTGATGCCGACTGCTGCTAAGGAGATGGCTACTGGTAACCTGGTGATGCCGACTGCTGCTGAGGAGATGGCTACTGGTAACCTGGTGATGCTGACTGCTGCTGAGGAGATGGCTACTGGTAACCTGGTGATGCTGACTGCTGCTGAGGAGATGGCTACTGGTAACCTGGTGATGCTGACTCCTGCTAAGGAGATGGCTACTGGTAACCTGGTGATGCTGACTGCTGCTGAGGAGATGGCTACTGGTAACCTGGTGATGCTGACTGCTGCTGTGGAGATGGCTACTGGTAACCTGGTGATGCTGACTGCTGCCGAGGTGACGTCTTTTAGTGCTGAGGATCCTGAGGCCAGCGTGTTGGCCGATACgagtcacaaaaaaagaaagcgcGAACATGTTCGTGTTCACTTTGCAATGCCAGACAGGGAGACCAGAGGTACTCAGACTGATCCTGTCTTAATCTCTGCATACCCGGGGCCCCAGGACTCAGATGGGcccttttttaagatttttcgGTGTGTGTTAGTGAATGGACGATTGAAGAGAACAAAGATCCATCCTCAATCCACTGGAAATCCAGGCGTGTGGAAACTATTCACACACGTCAGGCCTGGGTATTTTCGAAACCCATGGATGGTGGCTCCGACCCAGGAGAATAAGACGTCCTATGTTGAAGGGGCCACGCTCCTGAAATCTGTGGAAGCTGTTTCTTTTGATAATGACGCAGGCTATATCCCTGTGCGGAAAGACTGGTATGCATCTCCCGAGACCAACAAGCGGTTCCTGGTGTTATCAGACTGTGGTGGGGTCATACTGGCAATCATCCTGGATAGAAATACGCTCTGAACATtgcattattttgtatttttgtattttcattggaGGATGTTGAACGAGGGTAGTTGAAAAtccaaaaaaaagctaaaatcatactcctgctttttgaaatgtatttgtattaatcCAAAAAACAGCCCAAACTATACTTCTGCTTTTGACATGTACTAGCTCCAGAACAGTTGAGACTGTGCTTCTGCTTGTGACATGAGTTTAacccaaaaacagctaaaatatatttctgcTCGTGAAACTATAATGCTGCTTTTGATTTTGGTTTGTGAGTGTTAATGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU303546 lncRNA downstream 741 31046727 ~ 31097325 (-) True G224161
TU303538 lncRNA downstream 2794 31094936 ~ 31095272 (-) True G224157
TU303549 lncRNA downstream 3911 31037338 ~ 31094155 (-) True G224164
TU303561 lncRNA downstream 6816 31085914 ~ 31091250 (-) True G224172
TU303501 lncRNA downstream 11457 30966190 ~ 31086609 (-) False G224135
TU303505 lncRNA upstream 2564 31105051 ~ 31120078 (-) False G224135
TU303499 lncRNA upstream 17197 31119684 ~ 31120078 (-) False G224135
TU303503 lncRNA upstream 17197 31119684 ~ 31120078 (-) False G224135
TU303580 lncRNA upstream 59190 31161677 ~ 31348325 (-) True G224184
TU303543 lncRNA upstream 60242 31162729 ~ 31171801 (-) True G224158
XM_039790834.1 mRNA downstream 77880 31017830 ~ 31020186 (-) False LOC120552646
XM_039790832.1 mRNA downstream 77880 31017830 ~ 31020186 (-) False LOC120552646
XM_039790831.1 mRNA downstream 77880 31017830 ~ 31020186 (-) True LOC120552646
XM_039790830.1 mRNA downstream 77880 31017830 ~ 31020186 (-) False LOC120552646
XM_039790836.1 mRNA downstream 77880 31018492 ~ 31020186 (-) False LOC120552646
XM_039789916.1 mRNA upstream 131267 31233754 ~ 31238960 (-) True LOC120552143
XM_039789917.1 mRNA upstream 196111 31298598 ~ 31328575 (-) True zbtb14
XM_039789570.1 mRNA upstream 228209 31330696 ~ 31337391 (-) True LOC120551970
XM_039790311.1 mRNA upstream 361125 31463612 ~ 31511341 (-) False epb41l3a
XM_039790310.1 mRNA upstream 361125 31463612 ~ 31507409 (-) False epb41l3a
TU303394 other downstream 416484 30632746 ~ 30681582 (-) True G224051
XR_005638046.1 other downstream 604687 30475318 ~ 30493379 (-) False LOC120552614
TU303357 other downstream 632197 30461502 ~ 30465869 (-) False G224031
XR_005638047.1 other downstream 677519 30406956 ~ 30420547 (-) False LOC120552615
XR_005638048.1 other downstream 1241094 29851546 ~ 29856972 (-) False LOC120552628
TU303612 other upstream 108274 31210761 ~ 31211360 (-) True G224195
TU303705 other upstream 197536 31300023 ~ 31301032 (-) True G224245
TU303660 other upstream 232319 31334806 ~ 31337397 (-) False LOC120551970
TU303782 other upstream 513583 31616070 ~ 31665371 (-) True G224289
TU303776 other upstream 522809 31625296 ~ 31660992 (-) False G224289

Expression Profile