RNA id: XM_039790843.1


Basic Information

Item Value
RNA id XM_039790843.1
length 3292
RNA type mRNA
GC content 0.51
exon number 12
gene id LOC120552656
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 23128644 ~ 23308035 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGATGCGCACACGTTCACCGGCTCGGCTCGCTCGTCCCGTCGCCCGCACAcacggagagagggagagtctCGGCTCTCCGCAAGCCGTGCAGTCAAGCTCTGCCCTGGAGAAGGATGGCAGCGTTACTTTGCAACTGAAGGTAGAGGCGGAGGGAAAGAATAATGAGGGACAAACCCAAACACCTTTTTTTTGCCGTTAATCAGCTGccgtgtgtgttcaggggaGTTCACGCGGACAggaAATCCAGAATGGCTTTCAGGATTAACCTCTGCACTTGGTAGAACTACCCAGAAGTTCACGTCTGTTTGCACAGCATCTCACAGCCTGGAAAATTCCATAATGTAAATGTatcttgcttgttttttttttctccattaaaCCTTCCGCTTTTGGCCATGAACCTTAGAGGATCTACCGGGACCGCTATTTCCTTAGTTTGGATATAGATTCCTCTTTTGCTTTGACTATTGCACAGGCCTGGAGCGGTGGCAAGTTGTGGCGGCGGCGGTGGTGGGAGGACCTTACCACTTTGGAACACGGGGATAACTTTTACAAAAGCACGCGCCACCATGAGGATATCCACCACCTCCTGTCTCTGTCCCTTTCTGGTCTGCCTCTGTTTCATCCAGAGGTGCTACGGGGCGGGCCACCACGTCCCCGCCAAAGTGCCCTCCAAGAACCAGACCAAACTGGCCAACGGGGAGACGGAAGTGCACCACAGGCCCAAGCGTGGCTGGATCTGGAACCAGTTCTTTGTTTTAGAAGAACACTTGGGACCAGATGCACAGTATGTGGGAAAGCTTCACTCAAACTCAGATAAAGGCGATGGATCCGTCAGGTACATTCTGAGCGGGGAAGGAGCTGGAACTATATTTATCATCGATGAAGTGACAGGAGATATTCATGCCACTAAGAGTCTGGATCGCGAAAGGAAAACACATTATGTCCTGCATGCACAAGCCTTGGACCGCTACACAGAGGAGGCGCTGGAACCAAAGTCGGAATTCATCATCAAAGTACAAGACATCAATGACAATGCTCCCAAATTTCCAGATGGACCCTTTGTAGCTACGGTGCCTGAGATGTCTGAAGTGGGCACTTCTGTGTTGCAAGTCACAGCGTCTGATGCTGACGATCCCACCTATGGAAACAGTGCCAGAATAGTCTACAGTATTCTACAAGGACAGCCATATTTCTCCGTCGACCCCAAAACAGGAATCATCAGGACTGCCTTATCTGACATGGACCGGGAAGCCAGAGAACATTACACCGTTGTTATCCAAGCCAAAGACATGGCAGGCCAGGTTGGAGGCCTCTCCGGCTCCACCACCATCAACATAACTCTGACAGACGTCAACGACAACCCGCCCATGTTTCCCCAAAAAAATTACCAGCTGTACGTCCCCGAATCAGCTCAAGTAGGGAAACCGGTGGGGAAGATCAAAGCCAATGATGAGGACCTTGGCATCAATGCAGACATCAAGTACAGCATCATTAACTCAGAGGGGGCCAACACGTTCTCCATATCTACAGACAGGGACACGAGAGAGGGGATCATCAGCCTCAAAAAGCCTCTGAACTACGAGAGAAAGAAGACCTACACTCTCCACATTGAGGGGACGAATACACATATGGATCCTCGTTTTTCCTATCTTGGCTCTTTCAAAGACACCGCCACCCTCAAGATCACAGTTGGGGATGTGGACGAAGCTCCTGTGTTTTCTATAGATCATTACATCATGGATGTATATGAGAACTCACCGAGTGGCACAGAAGTGGGCGTCGTAACAGCTCGAGATCCTGACAGCAGGAACAGTCCTGTCAGGTACTTTTTGGACAGCAAAGAGGAAGGAGTAAGGTACTTCAGAATCGATGAAATCAGTGGACTTATACGGACGACGCAGCCTCTCGACAGAGAAGACATGGCTTGGCACAACATCACTGTGATGGCCTCGGAGGTTGACAACCCCAGCCTGCTCAGTCACGTTCCTGTTACCGTCCAGGTGCTGGACGTGAACGATAATCCGCCAGAAATAGCTACAGACGAGGAGGTCATTGTGTGTGAGAGCTCAAGGCCGGGGCAGGTGATCCAGACTGTCACAGCAGTGGATAAGGATGACTTTGCCAATGGACAGCGGTTTTCCTTTGCTTTGCCGAGCCAGCTACCAGTTAATCCCAACTTCACCCTGAAGGACAACGAAGACAGCACAGCCAGCATCATTGGCAGGCGGCGGCGTTTCAACCACCTGACCCAGGAGCTGTATGAGCTGCCCATTGTGGTGTGGGACGGTGGGGAGCCGTCGTTGAGCGGCACCAGCACCTTGACCCTCCGGGTGTGCCCATGCCAGCGCCACGGCAGGATCCGGATGTGCCAAGGCGAGGCGTTCCTCTCCTCGGCGGGTCTCAGCACGGGGGCTCTGATTGCCATCCTGCTGTGCATCGTCATCCTGCTGGCAATCGTGGTTCTCTTCGTCACACTGAGACGGAGCAAGAAAGAGCCCCTTATTATCTCCGAAGAGGACATCCGAGAGAACGTGGTCACCTACGACGACGAGGGCGGAGGCGAGGAGGACACCGAGGCCTTTGACATGATCGCCCTGCGCAACCCAGCCGCCGCCGAAGAGCTCAAGTTCCGGCGGGACGTTCGCCCAGAGGCGAGAAAACACTGCGCCACGCCCCGCAGCCGCCGGACCAAGGCGGTGGAGCTGGACGAGGTGGACGTGCACGAGTTCATCAAGCAGAGACTGGTGGAGGCCGACGTGGACACCAGCGTGCCGCCCTACGACTCCCTCCAGACCTACGCTTACGAGGGCCAGGGCTCACCCACGGGATCCATCAGCCCTTTAGACACTCCCGGGACACAATCAGAGCAGGATTATAACTATCTGGACGACTGGGGGCCTGAGTTCCAGAAACTGGCAGAACTCTACGGAGAGGCAGATTCAGATGTGACGACCTAGTCGGCGATTTCGCTCCTGTGCAAACCAAATCTGTTtgaaatacgtttttttttttcaaattttcagTGGACACTATAAACAAACAGAGATGCTTTCACACTGTTCTGGTGGTTTACGACTTTTACTGTTGAACTCAAAAgactgctatttttttttttttctttttcattttgtcgctttggattATTGGTCGTTCATCTGGAAgtattaaaacagattttaaGATGGAAGAACAACAATATGggggaaaaggaaaaggaaatttTCCTTGgtgtatattttttattgctCAATAAAGTCCTAAAATCCACATGAGTGGATATGTGAAAAA

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K06805 CDH18; cadherin 18, type 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU300293 lncRNA downstream 8356 23119778 ~ 23120288 (-) True G221950
XR_005638061.1 lncRNA downstream 56813 23070954 ~ 23071831 (-) False LOC120552653
XR_005638060.1 lncRNA downstream 57109 23070954 ~ 23071535 (-) True LOC120552653
TU300274 lncRNA downstream 88510 23039849 ~ 23040134 (-) True G221933
TU300269 lncRNA downstream 146293 22981964 ~ 22982351 (-) True G221928
TU300305 lncRNA upstream 34435 23256489 ~ 23256834 (-) True G221960
TU300307 lncRNA upstream 92634 23314688 ~ 23314893 (-) True G221962
TU300324 lncRNA upstream 179498 23401552 ~ 23402694 (-) False LOC120552322
TU300346 lncRNA upstream 450806 23672860 ~ 23673189 (-) True G221999
TU300348 lncRNA upstream 469359 23691413 ~ 23691962 (-) True G222001
XM_039790942.1 mRNA downstream 57747 23068720 ~ 23070897 (-) True LOC120552718
XM_039790941.1 mRNA downstream 207388 22912562 ~ 22921256 (-) True LOC120552717
XM_039790272.1 mRNA downstream 240413 22841027 ~ 22888231 (-) False LOC120552328
XM_039790271.1 mRNA downstream 246347 22841027 ~ 22882297 (-) True LOC120552328
XM_039790665.1 mRNA downstream 354860 22697027 ~ 22773784 (-) True LOC120552530
XM_039790260.1 mRNA upstream 179489 23401543 ~ 23519526 (-) True LOC120552322
XM_039790262.1 mRNA upstream 179489 23401543 ~ 23452481 (-) False LOC120552322
XM_039790261.1 mRNA upstream 179489 23401543 ~ 23452038 (-) False LOC120552322
XM_039790263.1 mRNA upstream 411629 23633683 ~ 23666857 (-) True cdh10a
XM_039789682.1 mRNA upstream 971324 24193378 ~ 24297851 (-) True drosha
TU300141 other downstream 910278 22202783 ~ 22218366 (-) False smpx
TU300142 other downstream 911095 22202783 ~ 22217549 (-) True smpx
XR_005637957.1 other downstream 1119556 21990017 ~ 22009088 (-) True tfr1b
TU299660 other downstream 2265979 20836297 ~ 20862665 (-) False LOC120552536
TU299133 other downstream 3801750 19315591 ~ 19326894 (-) True G221048
TU301970 other upstream 1741391 24963445 ~ 24967990 (-) False msl2b
TU302014 other upstream 1834539 25056593 ~ 25086708 (-) False LOC120552232
TU302146 other upstream 2334419 25556473 ~ 25562540 (-) True LOC120552299
TU302187 other upstream 2508702 25730756 ~ 25738884 (-) False LOC120552722
TU302229 other upstream 2606037 25828091 ~ 25834224 (-) False mynn

Expression Profile