RNA id: XM_039790862.1


Basic Information

Item Value
RNA id XM_039790862.1
length 2918
RNA type mRNA
GC content 0.47
exon number 28
gene id vps41
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 19196583 ~ 19213652 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCTTTGTATTGTCATGTGATTTAACTTATGACAGAGGGACCTGGCTTCGACAACAAACATCACTTTGTTGTAGAGTGGATATTTTTGACAAGCAAACCCAATTGCGATATTGTGGACGCTTAACATGTATTCTCTGAAAACGTATTGAGATATTTTATATAACTATTCTGCTTGGATACAGCGAATAACGATGGCGGATGTGGAGGAGCAGGGCAGAAAACAAAGTGAGGAATTCACAGATGAGTCTGAGGAGGAGGACAGCGAGGAGGAGCCCAAGCTGAAGTATGAGAGGCTCTCCAATGGGGTGACAGAAATCCTCCAGAAGGATGCAGCCAGCTGTATGACTGTCCATGACAAGTTTCTTGCCCTAGGTACTCATTTTGGGAAGGTCTTCCTGCTGGACATCCAAGGAAATGTAACTCAGAAGTTTGAAATTAGTTCAGTGAAGATCAACCAGATCAGTCTGGATGAAAGTGGAGAGCATGTGGGCATTTGCTCCGAGGATGGGAAGGTTCAAGTGTTTGGTCTCTATACAAGAGAGGGCTTCCATGAGAACTTTGACTGTCCCATCAAAGTGGTAGCATTACACCCTCAGTTCACCAGATCAAACTACAAACAGTTTGTTACTGGGGGCAACAAGCTGCTCCTGTATGAAAGAAACTGGTTGAATCGCTGGAAGACGTCTGTGCTACATGAAGGCGAGGGCTCAATCACTGCAATCCAGTGGAGAGCTAACCTCATTGCCTGGGCCAACAATGTGGGTGTTAAAATCTATGATATTGGTACAAAACAGCGGATCACAAACGTGCTGCGGGATAATGTCAGTCTGAGGCCTGACATGTACCCTTGCAGCCTGTGTTGGAAGGACAACAGCTCTCTCATTGTTGGCTGGGGTTCTTCCATTAAGATTTGTGttgtgaaagaaagaaatcctACTGAAATGAGAGATCTGCCCAGCCGCTATGTGGAAATAGTGTCTGCATTTGAGACCGAGTTCTTCATCAGTGGCCTGGCCCCGCTGGCAGATCAGCTTGTCACCCTTTACTTTGTGAAGGAGAACTCTGATCACATGgttGAAGAGTTCCGTGCGCGGCCTCGTCTCGACATCATCCAGCCTCTCCCTGAGAGCTGCGAGGAGATCTCTTCAGACGCGCTGACCGTGCGCAACTTCCAAGACAACGAGTGCAGAGACTACCGCCTCGAACATTCTGAGGGAGAGTCGCTCTTCTACATCATCAGTCCCAAAGACATCGTCGTGGCCAAGGAGCGAGACCAGGATGACCATATCGATTGGCTACTCGAAAAGAAGAAATATGAGGAGGCTCTGATGGCTGCAGAGATCAGTTTCAAAAACATCAAGAGACACGACGTTCAGAAAATTGGGATGGCTTACATCAATCACTTAGTGGAAAAAGGAGACTATGACAGTGCTGcgagGAAGTGTCAAAAGGTTCTTGGAAAAAACATGGAACTATGGGAAAATGAAGTGTACAGGTTTAAGACCATCGGACAGTTGAAGGCCATCAGTCAGTATTTGCCCAGAGGGGATCTGCGTCTCAGACCGGCCATTTATGAAATGATCTTGCATGACTTTCTCAAAACTGACTATGAGGGTTTTGCCACACTGATCCGGGAATGGCCTGGAGAGCTTTATAATAACATGGCCATTGTTCAGGCAGTCAGCGATCACCTGAAGAGGGACCCCACCAACAGAACCTTGCTCACCACGTTGGCTGAACTGTACACGTACGACCAGCGGTACGACAGAGCTTTAGAAATCTACCTGAGGCTGAGGCACAAAGATGTTTACCAGCTGATCCACAAACACAACCTTTTCTCCTCCATAGAGGACAAGATCGTCCTCCTCATGGACTTTGACAAGGAGAAAGCTGTCGACATGCTTCTGGACAATGAAGATAAGCTATCAACAGACAGGGTGGTGGAAGAACTAGCAGACAGGCCCGAGCTTCTGCATGTGTACCTCCATAAACTGTTCAAGCGGGACCACCACAAAGGCCAAAAATATCACGAGAGACAGATTGGTCTGTATGCCGAGTATGACCGGCCAAATCTCTTACCTTTCCTGAGAGATAGCACACACTGCCCACTTGAAAAGGCTCTCGAGGTTTGTCAGCAGAGGAACTTTGTAGAGGAGACTGTCTTCCTGCTCAGCAGGATGGGGAACTGCAGACGAGCGCTGCAGATGATCatggaggagctggaggacgTGGACAAGGCCATAGAGTTTGCCAAAGATCAGGACGATGCAGAGCTCTGGGAGGATCTCATCTCTTACTCCATTGACAAACCACCATTCATCACCGGCCTCCTGAATAACATTGGTACTCATGTGGATCCCATTCTGCTCATCCATCGCATTAAGGAGGGCATGGAGATCCCAAACCTCAGAGATTCACTAGTGAAAATCCTCCAGGACTACAATCTGCAGATCCTTCTGAGGGAAGGATGTAAGAAGATCCTGGTGGCCgactccctctctctgctccaGAAGATGCACCGAACACAGATGAGAGGAGTCCGGGTCGACGAGGAGAACATTTGCGAATCGTGTCATGCTACAATATTACCATCAGACATGGCCAAACCCTTCAGTGTGGTGGTGTTTCACTGCAGACACATGTTTCACAAGGAATGTTTACCATCTTCAGGAACAATTCCTGGGGTGCAGTTTTGTAACATCTGCAGTGCGAAGAAGCGCGGGCCAGGAAGTGGAATCCTGGAGATGAAGAAGTAAACGGGGATCTACGCACTCACAATTTTATTATTGATGCTTTTACGCCCCCTCACCCCTCCATGTTGCTTTCCATTTACTGTCATTTATCAATGAATATCACCTTCCCTCAGTCACTGAACTGTACACTtgcagaaataaaaataaaaacatgtatatATTGGA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K20184 VPS41; vacuolar protein sorting-associated protein 41

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299030 lncRNA downstream 153367 19040265 ~ 19043216 (-) True G220972
TU299031 lncRNA downstream 153367 19040265 ~ 19043216 (-) False G220972
TU299033 lncRNA downstream 153367 19040265 ~ 19043216 (-) False G220972
TU298921 lncRNA downstream 366598 18829751 ~ 18829985 (-) True G220893
TU298915 lncRNA downstream 380205 18815906 ~ 18816378 (-) True G220888
XR_005637963.1 lncRNA upstream 103002 19316654 ~ 19317227 (-) True LOC120552156
TU299179 lncRNA upstream 158939 19372591 ~ 19374516 (-) True G221086
TU299181 lncRNA upstream 223314 19436966 ~ 19439539 (-) True G221088
TU299185 lncRNA upstream 232393 19446045 ~ 19446294 (-) True G221090
TU299191 lncRNA upstream 303720 19517372 ~ 19544392 (-) True G221095
XM_039790858.1 mRNA downstream 1060 19182050 ~ 19195523 (-) False LOC120552661
XM_039790857.1 mRNA downstream 1092 19182050 ~ 19195491 (-) True LOC120552661
XM_039790357.1 mRNA downstream 77601 19112196 ~ 19118982 (-) True lypla1
XM_039790453.1 mRNA downstream 125967 19069163 ~ 19070616 (-) True LOC120552400
XM_039790451.1 mRNA downstream 126166 19069163 ~ 19070417 (-) False LOC120552400
XM_039789932.1 mRNA upstream 101931 19315583 ~ 19330554 (-) True ankha
XM_039789935.1 mRNA upstream 103602 19317254 ~ 19330554 (-) False ankha
XM_039790486.1 mRNA upstream 262228 19475880 ~ 19514037 (-) True fam49bb
XM_039789579.1 mRNA upstream 304878 19518530 ~ 19585448 (-) True asap1b
XM_039789763.1 mRNA upstream 426204 19639856 ~ 19648801 (-) True chpf2
TU298948 other downstream 247102 18938999 ~ 18949481 (-) False mettl4
TU298817 other downstream 565108 18610236 ~ 18631475 (-) True G220833
unassigned_transcript_1418 other downstream 571785 18624726 ~ 18624798 (-) True trnar-ccg_3
TU298248 other downstream 2321283 16874649 ~ 16875300 (-) True G220412
XR_005637973.1 other downstream 2401459 16783069 ~ 16795124 (-) False LOC120552205
TU299133 other upstream 101939 19315591 ~ 19326894 (-) True G221048
TU299660 other upstream 1622645 20836297 ~ 20862665 (-) False LOC120552536
XR_005637957.1 other upstream 2776365 21990017 ~ 22009088 (-) True tfr1b
TU300141 other upstream 2989131 22202783 ~ 22218366 (-) False smpx
TU300142 other upstream 2989131 22202783 ~ 22217549 (-) True smpx

Expression Profile