RNA id: XM_039790878.1


Basic Information

Item Value
RNA id XM_039790878.1
length 2472
RNA type mRNA
GC content 0.50
exon number 5
gene id tmtopsb
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 21876164 ~ 21917655 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAGCTAACTTGAaaaatgatcgattttatactCGAGCATAGGTTTGAACCCTTTGGAGGAGAAACTGGAATTTAAACGCCTTGGTGCCCACCAACCTCGGGATGTTGTCATCACTCTAACTGCTGGTAAAAGTAACCGCGGTTAAACGTGAAGTGGTTAGCTTACAAAAATAAGTCAAGTTTGCCCAGAGGCAGAACCGCCGCGTCACCTTTCTCTTTAGTGAGCCCTCAGCCTTGGCTGTCATGTGAGCGCACGGCGCAACAGCTGGACTCCCCCGTGCGCCTTCGCTTCTCCAGATGGGTTGACAGAGTCAACAGCACCCAGAGACCCGATGGTGCCGTCCCGCGGTGCAAACTTCGGGCAGGTGCAAACTTGGCGGTTTTGCCCGGTATGATAGTTTGCAACGTGAGCCTGAGTTGTGCGCACTGTCCCGGTGGAGTAGCCGGTGGCACGGCGGTGACGGACGCATACGAAGAGGTGTCCGGttctctccctcctccgtcCCTGACCCCGAAGGGGCACCTGGTGGTGGCGGTGTGCCTCGGCTTCATCGGCACCTTCGGGTTCCTCAATAACCTCCTGGTGCTCGCGCTGTTTTGCCGGTACCGTTCTCTGCGAACGCCCATAAACCTCCTGCTGGTGAGCATCTCTGCTAGCGACCTGCTGGTCTGCGTGCTGGGCACCCCGTTCAGCTTCGCGGCCAGCACCCAGGGACGCTGGCTGATCGGACGCGAAGGCTGCATATGGTATGGGTtcgttaactcatgtttagGCATCGTCTCCCTGATCTCCCTGGCCGTCCTGTCCTATGAGCGTTACTTCACCATGATGAAGCCCACTATAGCCGACAACAGAGACTTCGGCCCAGCACTGGGAGGGATCTGCTTCTCCTGGCTCTACTCTGTGGCCTGGACTGTACCTCCGCTACTGGGCTGGAGCAGATACGGGCCCGAGGGTCCAGGCACCACCTGCTCAGTGGACTGGAAGACCCAGACGGCAAACAATATCTCCTACATCGTCTGCCTGTTCATCTTCTGCCTGGTCCTGCCGTTCGGCGTCATCCTCTACTCCTATGGAATGTTGCTGCACGCCATCCGACAGGTCCGCAGAGGGAGCTCAGTGGTTACCCGCCGCAGAGACCAGCGGGTGCTGGTGATGGTGGTCACCATGGTGGTGTGCTACCTGGTCTGCTGGCTGCCCTACGGAGTAGCTGCTCTGCTCGCAACCTTCGGCCCTCATGGCCTTTTGACCCCGGAGGCGAGCATCACGCCGTCACTGCTGGCCAAGTTCTCCACTGTCATCAACCCTGTTATCTATATATTCATGAACAAACAGTTCTACAGGTGTTTCAGGGCGTTCCTTAACTGCTCCGCCACCGAGCCACCCTCCACCTCAAAGACATTTTCACGGCCGACCAAGACGCTCCGCACCGTCCGCCAGAAGAAGGAATGTCACGTGTCCGATCCTGCCCCCTCTTCCGCCCTCCCCACGCCCAACTCCATCCACGAGTCCCCGCAGGGAGCCAATCAAGTGGCTCCGTCTGCATCGAATCGACACTCTGCTGCTTCACACACCCCTACTGCTTACACCCCCAAACCCAAACTGATTCTGGTGGCTCACTACagggaataaaaacaaaaacaagagctGAAGGTTTACAGAAAAAGTATAAGGGAGCGGGGCGCAGGTCTCCAATTAACAACCAAATCCTCTTAATAGTGAAAAAAGTCGCAGTGGGAGTCTTAAATACAAACTGGAACATTTTTAATCCCAGAACACATTATTATTGCTCTGTGAAGACGGCAAACAGGGATACACACAAAATGCCAGTCTCATCCTGTTTACCACAGGCACTGCATACACAGCAGTATTATAGGGCTATGCATAGTGCTTCAAGTTAAGATTACACATGAAAAAAGCCACATAAGTAGGTGAAGCTTTTTGCTTGTATTGATGAAGTATCTTTGTTACACAACTAAATAGCGTTCTTTCTTTTCAGGAACAATTTGAAGAAGCACAGCGTTCTTTGGCGGAGATTTCATAAATTGTTTCGTGTTTTTTTGTAAACGGGGCCATGAGATATTTTGTTGGCTCAAGTGTGTAGCTACCGTTAGCAGGattattcttattattctttctttttctgcgATAATTCGGTTCAAGAACAGGGTAAGCATTTTTTCATGACACCATTTCCATGCCTGATATTTGAGGATTCTATACAGAGTATTAAATATTTGTTGAACATTTTTATGCAATTTAGAACTTAGAAGGTTTCTATTATGCCTTTATTTACACTTAGCTGTACGTAGGCCCTCTGTCTGTTATGAAAGCCTTTAATAGGGACATTTCACCATGTTATGAGGGATATTTGAGTCGTCTTGTTGTTTCTCTCCATTTAGTGGAAACATGGttttgtgttgtcttgtgttttcttttgcttaTGTAACATAAATGAAATCATGTCACAGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU299991 lncRNA downstream 43280 21832156 ~ 21832884 (-) True G221712
TU299984 lncRNA downstream 60441 21814496 ~ 21815723 (-) True G221708
TU299960 lncRNA downstream 144677 21731287 ~ 21731487 (-) True G221695
TU299875 lncRNA downstream 458157 21415951 ~ 21418007 (-) True G221616
TU299861 lncRNA downstream 503473 21345698 ~ 21372691 (-) False G221604
TU300069 lncRNA upstream 26715 21944370 ~ 21944690 (-) True G221768
TU300100 lncRNA upstream 173886 22091541 ~ 22091753 (-) True G221793
TU300130 lncRNA upstream 196727 22114382 ~ 22120446 (-) False LOC120552473
TU300148 lncRNA upstream 306234 22223889 ~ 22246053 (-) False G221832
TU300146 lncRNA upstream 319159 22236814 ~ 22246053 (-) True G221832
XM_039790164.1 mRNA downstream 156659 21716547 ~ 21719505 (-) True LOC120552274
XM_039790163.1 mRNA downstream 164548 21706905 ~ 21711616 (-) True LOC120552272
XM_039790162.1 mRNA downstream 165019 21706905 ~ 21711145 (-) False LOC120552272
XM_039790161.1 mRNA downstream 165019 21706905 ~ 21711145 (-) False LOC120552272
XM_039789470.1 mRNA downstream 176121 21693431 ~ 21700043 (-) True ptchd3a
XM_039789694.1 mRNA upstream 35990 21953645 ~ 21991347 (-) True tnk2a
XM_039789696.1 mRNA upstream 35990 21953645 ~ 21988802 (-) False tnk2a
XM_039789695.1 mRNA upstream 35990 21953645 ~ 21988802 (-) False tnk2a
XM_039789693.1 mRNA upstream 35990 21953645 ~ 21988802 (-) False tnk2a
XM_039789697.1 mRNA upstream 74634 21992289 ~ 22009088 (-) False tfr1b
TU299660 other downstream 1013499 20836297 ~ 20862665 (-) False LOC120552536
TU299133 other downstream 2549270 19315591 ~ 19326894 (-) True G221048
TU298948 other downstream 2926683 18938999 ~ 18949481 (-) False mettl4
TU298817 other downstream 3244689 18610236 ~ 18631475 (-) True G220833
XR_005637957.1 other upstream 72362 21990017 ~ 22009088 (-) True tfr1b
TU300141 other upstream 285128 22202783 ~ 22218366 (-) False smpx
TU300142 other upstream 285128 22202783 ~ 22217549 (-) True smpx
TU301970 other upstream 3045790 24963445 ~ 24967990 (-) False msl2b
TU302014 other upstream 3138938 25056593 ~ 25086708 (-) False LOC120552232

Expression Profile