RNA id: XM_039790880.1


Basic Information

Item Value
RNA id XM_039790880.1
length 1441
RNA type mRNA
GC content 0.50
exon number 10
gene id LOC120552675
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 9737279 ~ 9745454 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTCAGAGAACTGACACTGGGACGTGTGTTTTTTAAACACTTCACGTGGTATGCTAAAGGTAAAGACGAGGCTCTAAGATGGCCTTGACTTTGGCAGACCGAGCCATTGGGGCCATTATTgggtcagcagcagcagatgcaGCAGCCCAGCCCATGCACTGGATCTACAATCCAGACAGGCTCAAAGAAGTTCTCTCTGATCTGGAGCCCTGTCCTGAGTTTCGGCCTCAGTCAGCCAATCCTTTTTACCGCAGGACGACGGGCGAGCAGACCTGCTACGGGGACCAGGCATATGTCCTGCTGGAGTCCCTGAGCGAGTGTGGAGATGTAAATGTGGAAGACTTGACCAAGCGCATCTACAAGTTCTTTGGCCCAGGAACAGTGTACGATCTGCCTCTCAATGATCCTTACAGGAAGAAAGAAGGTCCCAAAGCCATCCTCCCCATAGATGGCCCATGGAGAAACGCGAGCCTGAAAGCTTTCATCAGAAATGTGGATGCTGGCAAAGAAGAAACTgGCTGTGATAAGGACTGTCAGATGGACGGCGTCACTAAGCTGGCTCCGGTGGTGGCCATGTACGCTGGCCGACCTGAGATGCTGGAGAAGGTGGAGAAAGCCATACGGGTGACCCAGAACAACGACATGTGTGTCGCTGGGACACTGGCTGCAGCAAGGTTTTTGGAGCATTTCATTCTGAATGGTCCAGATCCAAATGCCCTAGATGCAGTTCTGGCCCAGTTGAATGACCCGAAGAGACAGAACCCTCAGGAGCTGGACCAGGCTACCATTGCACATATCCACCAGGTGAAGGACAACCTGGCCAAGACATCCCAACAGCTGATACCTGCTGTGTTCACAAACACATGAGCTTTGCCTGGTGCGTTCCAGGGAGCGCTTCATGGAGTCCTGAAGCTGAAACAGCTGGATGAAGCAGTCAGGGACACCATGCGCTGCGGGGGATGCACCGCCAGCCGAGCCTCCTTTATAGGAGCCTGTTTTGGGGCACAGACTGGTCTCCATGGAATCCCAGAGTCTTGGAGGAAGAGGACACTCAGATACCCTCTGCTGCTGGAGCTCGCCGAAAATGTGgtccaaaaaagtcagcaaTTGTAGTTCGTAGCTTTGATTTTTGCCctaaataaaatagttttatCTGCTATCAAGTATTTATGGAGCGCTGGATAATCAAAGCTATTTTAGAAGACTTTCTCAAGTTGCAGATGCACTTTGACACGACGATCCATGACAGTCTCATTCTAAAGTCTTGTACTGAATGAAACTTGAATCCTTTTTGCTCCGTCAAAGCTGCATCATGTAAGAAAGTGAAAGTCTGTGTGAAGTATTTATGTTGTGTTGAGGACATGGAATACATTAATACTCAGCAGCTGCATCGTACACTAGGAAACCGTCTCAAATAAAGAACCTTTATGTCGCCAACATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295971 lncRNA upstream 71601 9614840 ~ 9665678 (+) True G218690
TU295976 lncRNA upstream 400740 9336332 ~ 9336539 (+) True G218693
XR_005637936.1 lncRNA upstream 444626 9260442 ~ 9292653 (+) True LOC120551942
TU295962 lncRNA upstream 486520 9250470 ~ 9250759 (+) True G218687
XR_005638014.1 lncRNA upstream 526194 9208182 ~ 9211085 (+) True LOC120552481
TU295993 lncRNA downstream 1575 9747029 ~ 9747273 (+) True G218709
TU295994 lncRNA downstream 1891 9747345 ~ 9747706 (+) True G218710
TU296015 lncRNA downstream 66765 9812219 ~ 9813878 (+) True G218724
TU296018 lncRNA downstream 96865 9842319 ~ 9842709 (+) True G218727
TU296019 lncRNA downstream 99500 9844954 ~ 9848196 (+) True G218728
XM_039790334.1 mRNA upstream 146102 9476783 ~ 9591177 (+) False ntng1a
XM_039790335.1 mRNA upstream 146102 9479065 ~ 9591177 (+) False ntng1a
XM_039790333.1 mRNA upstream 146102 9479066 ~ 9591177 (+) True ntng1a
XM_039790336.1 mRNA upstream 146102 9479067 ~ 9591177 (+) False ntng1a
XM_039790338.1 mRNA upstream 146102 9479067 ~ 9591177 (+) False ntng1a
XM_039789548.1 mRNA downstream 2448 9747902 ~ 9762135 (+) True sh3glb1a
XM_039789552.1 mRNA downstream 44858 9790312 ~ 9796422 (+) False fam168b
XM_039789550.1 mRNA downstream 44859 9790313 ~ 9796422 (+) True fam168b
XM_039789551.1 mRNA downstream 45179 9790633 ~ 9796422 (+) False fam168b
XM_039790057.1 mRNA downstream 51727 9797181 ~ 9805437 (+) True rbbp8
TU295978 other upstream 278579 9458183 ~ 9458700 (+) True G218695
TU295977 other upstream 359132 9376944 ~ 9378147 (+) True G218694
XR_005638015.1 other upstream 507116 9211918 ~ 9230163 (+) False rnpc3
XR_005638067.1 other upstream 998637 8738575 ~ 8738642 (+) True LOC120552752
TU295658 other upstream 1131456 8600960 ~ 8605823 (+) False G218441
unassigned_transcript_1412 other downstream 487032 10232486 ~ 10232557 (+) True trnac-gca_34
TU296163 other downstream 677132 10422586 ~ 10423249 (+) True G218848
TU296196 other downstream 742813 10488267 ~ 10494988 (+) True G218875
TU296191 other downstream 777984 10523438 ~ 10526204 (+) False dcaf11
XR_005637949.1 other downstream 1023921 10769375 ~ 10815975 (+) False zgc:101569

Expression Profile