RNA id: XM_039790909.1


Basic Information

Item Value
RNA id XM_039790909.1
length 3895
RNA type mRNA
GC content 0.49
exon number 27
gene id ncapg2
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 18359504 ~ 18374026 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCATCCAAATTTGCGCGGGTTTGCAGTTGTTATTAGGAGGCTGTCAGCCAACGGTTAGGCTTAGCTACATAATTAAAAATCAAAAGTTTGCCTGGGAAACCTTCACGTCCCTTACCATCGCTTGGAGAACCGATAACATGTCCAAGCGAGAGGCGTTTTTAGAGGCTGCCTGTCAGGAAAATGTGGAAGACTTCCTTCGCTTTATCCAGCTTCATAAGAACAAAACGGAGCCTTTCGATGTGGAGGAGGTGGTGCAGGAGATGCCCAGAGACCAGAGGCAGACTCTGTGGGGAAAACTGGCTTCACTCCTTCAGGATATCCTGCAGGAGTTGCCTCCGGAGCGCTGGGTGAAGGGCAGGGATGAGGGCATGGAAGTGGAGTCGGCTGCAGACCCTAAACATGTCATGGCTGTTGTGGATGGGGTGACACTAGTGGCTGCTGTGTCCTTAAAGGTCCTAGAAGACGGGGACACCTACAGTTCCCTTCTGGAAATAACCCACAGGCTTCACGATGTTCTGGTGTCGCTGCCTGTCTCAGATGCACCCCTGCAGCTCCATATCCACAAACTGTGCGAGGCGTGGTGGAAGAAGGGGCTGAAGGAGAAAGAACAGTTTGGTCGCACTGCTTTCTTCATCTCTCTGCAGAAGAGCTTAATTTTGAAGAAACCAGGTGTTGAGATCCAAAGAGTCTGGAGTCTCCATGATGTGCTTTGGAGTCTGGACTACACATCAGAAGATAACAAGCAGATAATCAACTTGTTGATTGATTGCTTTCTCCATCCTATTTACATTAGAAGCGATGACGGAAAGCGATTCCTGGTGTTTCTTTTCAGCTGGAATGTCGACTTCATCTGGATTATTCATGGCACCATCAAAAACCAGCTGGAGTTTTATAGCAAGAACATGACCACTCACATTACGGAGATCTACTTCAGAGCCTGGAATAAGGCTAGCGGGGACTTTCTGGAGAGGATTGAGAACTTATGCATTCAGGATTTTATGCAGAATGCGATCCTCCTTCATAGAACATCTCCTGTCCATGCCAAAGTCCGACAGATCGTAAGCTATTTCCACACAAGGAAGGGCTGCAGCAAGGTGGACAAGATGCTCTGTAATCTCTACAAGCCCATTCTCTGGAAAGCTTTAAGTGCTCCAAACTTCGAGGTGCGTGCAAATGCCACTTTGCTTTTCACTGATGCCTTCCCAGTCCATGACCCGGAGCAGAACTACAAGAATATAGATGAGGTCGTTCAAAAGCAGCTGGACACAGCGATGGGCCTCCTTGATGACCCCCATACCACTGTACGCTCCAGTGCTACCCTGGGCGTGTGTAAGATCCTGGCCAAGTGCTGGGAGCTCATCCCTAGTATCATCATCACAGACTTCCTGAAGAAGCTGGTGATGGAGCTGGCGGCTGACAACAGCTCCCCTGATGTCCGGTGCTCAGTCTTCAAGTGTCTGACTATTGTCTTGGACAACACTCTCAGCCATCCAATATTGGAAAAACTCCTGCCTACTCTCAAATACAGCCTTCACGACACCTCAGAGAAAGTCCGCACAGCTTTCCTTGACATGCTTATTAAGGTCAAGGCAGTGCGTGCTGCCAAGTTTTGGGACGTGTGCAACATGGACCACCTGCTGGCCCGTCTGGCTATCGATTCCCATCCGGTTTCCAAGCGCATTGTCGATCTGCTCTTCAAGTCCTTCTTCCCCGTCAACGATTCTGAGCACGAGTGGTGCTGTCGGTGCATCACCCTCATCCAGATGAACCCCATGGCTGCCAGGAAGTTCTACCAGCAtgcccacaaacacacagcccCCACTAACATAATAAAGCTCATGTTGGCCATTCGCCGTGTTCTGAACAGCTCTATCCAGACTGACACTGACCTGTCCCAGATTAATGACAGCAACAAGGAGAACAGTGCAGCTGAACCTCTGCTTGGGAAAGACTTGGCCGTCGTGTCCAGTCTGCTGGAGGTCGTGGCCATCCTGTGGAGAAGTGTCGAGAAGGCCCTGAAACAAAATGAAGAGGCCCAGAAGTACACTTTTGCCAAGTTTGGAAATGTCATGGCCAAGTATTTCCAGGCCTTTGAGGATGAGCGGTGTACCGTTCCTCTCATACAACTGGCCTCATTTATGCCCCCAGCTGCAGTTCCAACATTCAGCTGTGGCATCCTGTCCAGACTGAGGAGGATGGACTCAGGAGCAGTGCTAACACAGTACAGCCAGCTGTTAGACTGCATGTGCTGCTGGGGCCAGGCTGCTGATATCCTCGAACTCGTCACTGACTGGCTAACTGAGGCTCTGACCAAGCAAGGGGACAAGGTGAACACCAATCGAAGAGTGCGTATCCAGGAGACTGTGGAGGCCAAACCAGACATGGCACTGGCTTACCTGGAGTACCTGTTCAGCAACAGTTCAACACGGGAGAAAGTCCTGGCTCTTGATCAGAAACCTCTGAAGCAGCTCCATACTGTTCTAGGAAACTGGAGGTTGGTCCTGTACACTCACCTCAGCTCCCCAACAGAAGACCCTAAAAGTCCCAGTATGGAGACTGCGCTGAAAGTCTTCATGTACCACGTGCGTTTCTGTGCACATCTGCAACATAATTCGTCAGAGGGTCGAGAGTACATGCTCTCTCTGGAGCATGTGGCAGCGTGGGTAGCTGAGAGGGTGTTACCCTTCCTGGCTAAACGTACCAACGATGATGACGATGAGTCGGAGAAATCACAACCACTGGCTGCACAGATAACTGAGAGTTTCCTGACGGTGTGCCGAGATGTTTTACTTGTGGGTTTGGGCGACGAGACGTTTAAGGGTCAAATCCTCCACTTGTGCTCGCTCACCCTCCTCTCCGAGGCAGGCTACCTGTGTATTCCTGCAGTGCTCCCGATTCTGAAGGAGGTGGTGGACAGCTATGGACCTgaggacaacaacaacaaccccgCTCAGGAAAATGAGGAAGATGCAACCACTGTCATTCTGAGTGTGGTGGGCAACATCTTTCAGAAGATTATAGAGCTCTTGGCTCGCCGTCTAAGGAAGGAACCAGAGGAGGGAAAACAGCTGTGTCAGTCAGCCGTTCCCGGCCTGACAGACTTCCTCCAAGTGGCAGTGACCTGGGACAAAGCACCTCTCAGGGGGGTCTTCTCTACTCTTTTTGCTGTCATCATTGTGGAGAAGAGACATTTGCTTCAGAAGATCACCCATCCTGAAGAGGTGATCGCCCCAGAGTCAGTGGAGGACATGCCTCCTCTGTCCAGCATCCTACTGTCTGTCATCCTCAAATTACCCTCTCTTACCAGAGCATTTTTGACAGAAGTCTGCTCCTCTTTCGACTCTGAGGCCATCAGCAGTCTGAGTGAACTAGCTTCCGTTCTGCACGTCTTGGCGGTCATCAGACACACAGGGCAGTCTAAAGCAGGTTTGAAGAGCGCAGCCATATGTGTTGAGCAGCAGCTTTACAAACATGCAGCCACATCTGTAGACACCAGAGACATCCAGGGGGTTATTTATGAATCTTCATTGAAGACTTTGAATGACATTCTGGATGTATAAATTGATCTGTTTGATATGTAATAACTGCTacacatttgtattttatgAAGCTAAGGAGAGCAGTATAATATCAGCTTTGCTGTAAGCATGACAGACTCCTGTTGCTGGCAGACAAATGACATGAAATATTTCGACTTCACTGACCaggtgtttaaaaaataataataaatggttTGGATTGAAATCTAAAACTGAGAACAAATGCCTCTCTGATGTTTTTCCAGATTGGCTCcacttagggctgggcgatatggagaaaatcagatatcacgatattcttgaccaaatacctcgatattgatattgcggcgatattctagggttgacaattggt

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU298686 lncRNA downstream 145115 18207365 ~ 18214389 (-) True G220732
TU298696 lncRNA downstream 157986 18188724 ~ 18201518 (-) True G220742
TU298640 lncRNA downstream 256348 18066795 ~ 18103156 (-) True G220695
TU298631 lncRNA downstream 310020 18049016 ~ 18049484 (-) True G220688
TU298627 lncRNA downstream 337615 18020560 ~ 18021889 (-) True G220685
TU298790 lncRNA upstream 52755 18426781 ~ 18483776 (-) False si:ch73-174h16.4
TU298776 lncRNA upstream 98099 18472125 ~ 18578077 (-) False LOC120552692
XR_005638063.1 lncRNA upstream 98109 18472135 ~ 18497789 (-) True LOC120552692
TU298818 lncRNA upstream 236210 18610236 ~ 18697970 (-) False G220833
TU298828 lncRNA upstream 248665 18622691 ~ 18623385 (-) True G220839
XM_039790534.1 mRNA downstream 1506 18231466 ~ 18357998 (-) True ptprn2
XM_039790454.1 mRNA downstream 211404 18145295 ~ 18148100 (-) True mnx1
XM_039790302.1 mRNA downstream 226521 18098246 ~ 18132983 (-) True lmbr1
XM_039790055.1 mRNA downstream 326276 18024594 ~ 18033228 (-) True shha
XM_039790102.1 mRNA downstream 515216 17751382 ~ 17844288 (-) False LOC120552245
XM_039790368.1 mRNA upstream 694 18374720 ~ 18407925 (-) True esyt2b
XM_039790371.1 mRNA upstream 694 18374720 ~ 18407924 (-) False esyt2b
XM_039790370.1 mRNA upstream 694 18374720 ~ 18407924 (-) False esyt2b
XM_039790369.1 mRNA upstream 694 18374720 ~ 18407924 (-) False esyt2b
XM_039790675.1 mRNA upstream 52736 18426762 ~ 18430468 (-) True si:ch73-174h16.4
TU298248 other downstream 1484204 16874649 ~ 16875300 (-) True G220412
XR_005637973.1 other downstream 1564380 16783069 ~ 16795124 (-) False LOC120552205
XR_005638013.1 other downstream 2074769 16266303 ~ 16284735 (-) False drd3
XR_005638012.1 other downstream 2074772 16266303 ~ 16284732 (-) False drd3
TU297865 other downstream 2294283 16064670 ~ 16065221 (-) True G220124
TU298817 other upstream 236210 18610236 ~ 18631475 (-) True G220833
unassigned_transcript_1418 other upstream 250700 18624726 ~ 18624798 (-) True trnar-ccg_3
TU298948 other upstream 564973 18938999 ~ 18949481 (-) False mettl4
TU299133 other upstream 941565 19315591 ~ 19326894 (-) True G221048
TU299660 other upstream 2462271 20836297 ~ 20862665 (-) False LOC120552536

Expression Profile