RNA id: XM_039790919.1


Basic Information

Item Value
RNA id XM_039790919.1
length 3207
RNA type mRNA
GC content 0.49
exon number 14
gene id LOC120552695
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 5535647 ~ 5555611 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCAACAGCTTCGAGACTTTCCGCCCATTTCCGCCATTGCATCGTCTTGCTATTTGCCTCCATTTTACTctcgtgtgtatgtgtgcgtgcgcagTGTCGGTGGAAGCTGGAAAGACAACAGGACGAAAAGGACGAGAAATACCTGCAGACATGGACGGcatCAGCGATGTTGCAGTTGGAGTGAAGAGAGGATCAGACGAGCTGAGTATGTACAACAGTCCCAACTCGGGCATGAGCAGTATCAGTGACGGGGCTTCCAATGGCAGTGACAGTAAAAAGCTTAGGGTGGAGGAGGCCCCACCATCTCGTGTGCTCCACATCAGGAAGCTGCCCAACGAGGCCTCGGAGACCGAAGTCATCGCCCTCGGCTTGCCTTTTGGCAAAGTTACCAATATCCTCACACTGAAGGGGAAGAACCAGgcgTTCTTGGAGATGGGGACGGAGGAGACGGCCATCACAATGGTTAACTACTACACCACTGTAACTCCGCACATCCGCAATGTCCCTGTCTTTATTCAGTACTCCAATCACAAAGAACTCAAAACTGATGCTGGCAATCAGCGGACCCAGGCGGTGCTTCAGGCAGTGTCGGCGGTCCAGTCCGGCGGCTCACCCAGCTCAGACGTACAGGAGGCTCTGGCTGCAGCCTCCAGTCCTGTGCTGCGGATCATCATCGACAACATGTTCTACCCTGTAACGCTGGATGTGCTGCAACAGATTTTCTCCAAGTTTGGCACAGTCATGAAGATAATCACATTCACCAAGAATAATCAGTTCCAGGCCCTTCTGCAGTTCAGCGATCCTGTCAATGCACAGCAGGCCAAACTGGCACTGGATGGCCAGAACATCTACAACTCGTGTTGCACGCTGCGTATCGACTTCTCCAAGCTGGTCAACCTGAATGTCAAGTACAACAACGATAAGAGTCGCGACTACACGCGGCCCGAGCTGCCTGCTGGTGACGGCCAGCCCAGCATCGACCCCTCGGTGGCCGCCGCCTTCAGCAAAGACTCCAACTCCCTCCTCGGTAAGATCCCAGGAGCGCTGAACCCTCTGAGCGCGGCGGcggcagcagctgctgctgcagggagGGTGGCCCTCGCTGGACAGACGGGCTCCAGCGGAGTCCTGCTGGTCAGCAACCTCAACGAGGAGGTTAGtaacacacctgcacacacacacacctgtcagaCGGACCATCTACCCCCCCTACCCCAACTTCATCCCTCtgtagttttgtttttgctgtttaGGGCCGGTAGTTTCCCTGTTCTACTTTTGTCATGTCTTGAGTCTGTCATAGCGGAGACCTTAAGAAGGTCCGTGCTGGGATGTTTACGTTACATAATGTGGTGTATTTATCTGTTTTCTCTGGCTGTGAATGAGCTTCTGACAATGTCCTTGTCTCCGATGCTAACTTTCAGTGTTTTTCTAACTGTCTGCTTTCTCTCCACCTCAACGCTTCTCCTCGTGCCCGCCTGTGGCTCTAATGCAGGAGTGTACGGCGATGTCCAGAGGGTGAAGATCCTTTACAATAAGAAGGACAGCGCTCTCATTCAGATGTCCGATGGCAACCAGGCCCAGCTAGCAATGAGCCACCTGAATGGCCAAAAGATGTACGGGAAGATCATCCGGGTGACGCTGTCCAAGCACCAGACGGTGGCGCTGCCCCGTGACGGCCTGGACGACCAGGGCCTGACCAAGGACTACGCCAACTCCCCACTTCACCGCTTCAAGAAACCTGGCTCTAAGAATTTCCAGAACATCTTCCCGCCATCTGCCACCCTTCACCTCTCCAACGTCCCACAAGATGTGACGGAGGATGACCTGCGGCTGCTCTTCTCCAACGCTGGAGGCACTGTGAAAGCATTCAAGTTTTTCCAGGATCGCAAAATGGCTCTGATCCAGATGTCAACAGTGGAGGAGGCCATACAGGCCCTGATTGACCTGCACAACTACAACATGGGAGGCAGCCAGCACCTGAGAGTCTCCTTCTCCAAGTCCACCATCTAAAGATCTGACCCACAGCGTGTCGGAAACCTTACAGACTGTGTCTGGACactgggggtggggggcagtTTTGTTGTTGGGGTTTTGTTGATCCTGTCATTCCtagagagactgacatttttgactcgcatcctttttttaaagagaagaATTGAGTATGTTTCAGATACTGGATCCTCCCAGCTATTCTTAACTGTACCTCTGTATTTTTATGTAAAACACAATATTACATGATTGATTGTCCCCCTGTATGATAGTTTGATGTAGATCAGTGTTTAATTCTTTATTTAGTTGGAAAGATACAGTACTTATGTGCCTTACTTGACAATATCAACCATTTCTACAGCTGGACATGGTTACTCATTACTCTGCTATGCTTCTGAGGCACATTGGTATTGGATATTTTTGGGGGTTAGTGAGAATGCAAGCTGTGTTGTCATCCTCTAGACATTGTTACAGTTTCCCTTTTAGTTTATCAACAGAAGAGAATATTCCTGAGGCAACATGTAAGAGTTTTCCAGCATCCTGTGCCTGGCAGCTTCACTTGAATTCCATTATTCCACGAGTACGCTCAGTGTGAGACTGTTCTCCCCAGTTTTGAATTCACATATCACGGTGTGATTTCTTTATCCGTGTTTTGAAGCCTTCCATGCTTTTTCTTCTTGGCAGTGAGGTGTAATCGTCAGTGACAATGGTTTTCTAAGCATGTTTAGTTATGATAGGATCTCCCATCAGAAAGTGTTGCATGCTGTGGAAGCAGTTAGAAGAGGAGTCCACTGTGATTTTATTGTCAAGTGACCGTTTACTAGAGAGGGCTACTCAGTTGGACCAAAGTTTCTGTGCCTTTTAGTGTTCCTTGAACTCATTTGAACTAAAAGCATTAGAACACACTGACGGCCAGAATTATAAGTGGTGAGTTAattcccattttttttaaagacccaACAGGACCTCTTGCTCAGAAATAACATagtaatgtgtattttttttcttccaagtcTGATTTTTATACAGCTCAAAATGTAAGGATTTGGTATAGTTCTGAAGAGGCACAATTAAAGGATGAATTATTTTCTAACAAGGGGAGGTGCGCCTTGGTTTCCTGCTTTTTGAGTTTTCCCTCTCATGGTCTCTCTCATGTATTCTGCATTACGTCTGTAGCATGCTTAATAAAACTATTCTGTAGCGCTGCATtca

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295097 lncRNA upstream 44279 5491143 ~ 5491368 (+) True G218039
TU295089 lncRNA upstream 113299 5421974 ~ 5422348 (+) True G218031
TU295084 lncRNA upstream 287961 5247295 ~ 5247686 (+) True G218026
TU295083 lncRNA upstream 301557 5233790 ~ 5234090 (+) True G218025
TU295081 lncRNA upstream 332751 5202587 ~ 5202896 (+) True G218023
TU295129 lncRNA downstream 74100 5629711 ~ 5630218 (+) True G218060
TU295136 lncRNA downstream 167197 5722808 ~ 5725509 (+) True G218067
TU295137 lncRNA downstream 167197 5722808 ~ 5727886 (+) False G218067
TU295138 lncRNA downstream 167197 5722808 ~ 5748244 (+) False G218067
TU295139 lncRNA downstream 167197 5722808 ~ 5757421 (+) False G218067
XM_039789543.1 mRNA upstream 646936 4881288 ~ 4888711 (+) True LOC120551947
XM_039789744.1 mRNA upstream 778830 4618641 ~ 4756817 (+) False plppr5b
XM_039789740.1 mRNA upstream 778830 4618646 ~ 4756817 (+) True plppr5b
XM_039789742.1 mRNA upstream 778830 4665575 ~ 4756817 (+) False plppr5b
XM_039789743.1 mRNA upstream 792683 4618639 ~ 4742964 (+) False plppr5b
XM_039790206.1 mRNA downstream 195270 5750881 ~ 5817627 (+) True reck
XM_039790046.1 mRNA downstream 299029 5854640 ~ 5895766 (+) True tgfbr1b
XM_039789959.1 mRNA downstream 354266 5909877 ~ 5928609 (+) True lancl2
XM_039789960.1 mRNA downstream 378409 5934020 ~ 5948852 (+) True vopp1
XM_039789958.1 mRNA downstream 724991 6280602 ~ 6454013 (+) False mpp7a
unassigned_transcript_1388 other upstream 677535 4858027 ~ 4858112 (+) True trnas-acu_1
unassigned_transcript_1387 other upstream 684237 4851324 ~ 4851410 (+) True trnas-gcu_48
unassigned_transcript_1386 other upstream 685051 4850513 ~ 4850596 (+) True trnas-gcu_47
unassigned_transcript_1384 other upstream 691530 4844032 ~ 4844117 (+) True trnas-gcu_46
unassigned_transcript_1383 other upstream 692937 4842631 ~ 4842710 (+) True trnas-gcu_45
unassigned_transcript_1392 other downstream 14394 5570005 ~ 5570086 (+) True trnas-gcu_52
unassigned_transcript_1393 other downstream 16441 5572052 ~ 5572133 (+) True trnas-gcu_53
unassigned_transcript_1394 other downstream 17451 5573062 ~ 5573143 (+) True trnas-gcu_54
unassigned_transcript_1395 other downstream 20510 5576121 ~ 5576202 (+) True trnas-gcu_55
unassigned_transcript_1396 other downstream 22999 5578610 ~ 5578692 (+) True trnas-gcu_56

Expression Profile