RNA id: XM_039790922.1


Basic Information

Item Value
RNA id XM_039790922.1
length 1569
RNA type mRNA
GC content 0.47
exon number 8
gene id pigm
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 8625445 ~ 8630973 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTTGAGTAGAAAATAAGAATTTGGAACTGCACTTCTGGATAACTTCCTTGTTGTCATGTCTGCAGTTAATGGGAAAAGCGAATCGCGTATTAACGAAACATGACGACAATAATACCAGAAATCTCTTAACGGCAAGCAGAGATGAGAGCAACGGAAACTCTGGCTAACGTATTCCAGCTTAAAGACGGGAAAACtagctaacttagctagctCCTAGTGAAGCCTGCTAATCAGGTTTCTCCTGCTTGGTTGGTGATGGAGAGGCTAATAACCAAGCTCACAGAAAAACATGTCCTTTTCACGGCTTCATTCGCTATACGACTGGCCTTGGTCGCTTTTGGAGACTACCAGGACAGGACTATGGTGGTGAAGTACACTGACATTGACTACCATGTGTTCACAGATGCTGCAAAATTCATTACTGAGGGGCAGTCCCCGTACAACAGATCAACCTACCGCTACACCCCTCTCCTAGCCTGGCTGCTCACCCCTAACATCTATCTCAGCATGGTGTTTGGCAAGATCCTCTTCATCGTGTGTGATGTGCTGTCAGGACTCCTCATCTATAGAATCCTTCGCATGAGAGGTCTGGGctcagagactGCACGTCGTGTTTGTTCTCTGTGGCTCCTTAACCCGCTGCCAATGGGAGTATCCAGCCGTGGGAATGCTGAGTCAATCCTGGCAGCCCTTGTGCTGGGGACATTACTTTGTATTGAAGCCAGGCATGTGATATGGGCAGCCATATTCTATGGTCTGTCAGTTCATATGAAGATCTATCCTGTTACATATGCTCTGCCCATCGCTCTAACCCTGCGCACGTCTGAGACCAGATCCGAGGACAACAAAAACGGGTGGAGGAGGTTCATTGGATTTATGGGAAGCTTTCTCAACCGAGAGCTGTTCCTCTTTGCAAGTGTGGCCGGAGGAGTTTTCTTTATGCTCACAGCCCTCTTCTATTATATGTATGGATGGGAGTTCCTTCATGAGACCTACTTGTACCATCTGACCAGAAGGGACATCAGACACAACTTCTCTCCATACTTCTATATGCTCTACCTCACCACAGACAGCAGGTGGAGCCAGTGGCTCGGCCTGGTAGCTTTCTTGCCACAGCTCATCCTGCTGTTGGTAGCATCATGGGCCTTTTACTCTGACCTGGCCTTCTGCTGTTTCCTGCACACCGCAATCTTTGTCTCTTTCAACAAAGTCTGCACTTCACAGTACTTCCTGTGGTATTTGTGTCTACTCCCTCTGGTCATCCCACACCTGAGTCTGTCACTAAAACAGGGAGTGCGACTGCTGATCTTCTGGTTTGTTGGACAGGGTATCTGGTTGGGCCCAGCCTACTTCCTGGAGTTTGAAGGCTACAACACCTTCCTGTTGATCTGGCTTGCTGGATTGCTCTTTTTGATTATCAACTCCTCCATCTTGATTCAGATCGTAACTCATTACAAACCAACACAAACTTCACAGAGACTGAAGGTTGAATAACATTCCAGTATTTTGAACTTAAGATGATGGACTATGgatatatgttaaaaaaaataaagtgtgtatTTTGTTAA

Function

GO:

id name namespace
GO:0006506 GPI anchor biosynthetic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016758 transferase activity, transferring hexosyl groups molecular_function

KEGG:

id description
K05284 PIGM; GPI mannosyltransferase 1 subunit M

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295668 lncRNA upstream 3725 8621500 ~ 8621720 (+) True G218449
TU295624 lncRNA upstream 160361 8464818 ~ 8465084 (+) True G218425
TU295621 lncRNA upstream 194507 8430438 ~ 8430938 (+) True G218422
TU295620 lncRNA upstream 207360 8408500 ~ 8418085 (+) True G218421
TU295619 lncRNA upstream 224366 8398919 ~ 8401079 (+) True G218420
TU295763 lncRNA downstream 3127 8634100 ~ 8634648 (+) True G218521
TU295770 lncRNA downstream 30633 8661606 ~ 8661968 (+) True G218528
XR_005637956.1 lncRNA downstream 82330 8713303 ~ 8720985 (+) False LOC120552042
TU295773 lncRNA downstream 82373 8713346 ~ 8721068 (+) True LOC120552042
TU295775 lncRNA downstream 82373 8713346 ~ 8721068 (+) False LOC120552042
XM_039790152.1 mRNA upstream 29089 8523299 ~ 8596356 (+) False LOC120552265
XM_039790156.1 mRNA upstream 29089 8579000 ~ 8596356 (+) False LOC120552265
XM_039790151.1 mRNA upstream 29089 8584019 ~ 8596356 (+) True LOC120552265
XM_039790154.1 mRNA upstream 29089 8587023 ~ 8596356 (+) False LOC120552265
XM_039790153.1 mRNA upstream 29089 8587033 ~ 8596356 (+) False LOC120552265
XM_039789688.1 mRNA downstream 106139 8737112 ~ 8739902 (+) True rps20
XM_039790974.1 mRNA downstream 110116 8741089 ~ 8750165 (+) False zgc:56231
XM_039790972.1 mRNA downstream 110117 8741090 ~ 8750456 (+) True zgc:56231
XM_039790973.1 mRNA downstream 110117 8741090 ~ 8750456 (+) False zgc:56231
XM_039789529.1 mRNA downstream 119947 8750920 ~ 8755753 (+) True LOC120551930
TU295657 other upstream 18867 8550783 ~ 8606578 (+) False G218441
TU295656 other upstream 18867 8600960 ~ 8606578 (+) True G218441
TU295658 other upstream 19622 8600960 ~ 8605823 (+) False G218441
TU295651 other upstream 44318 8549870 ~ 8581127 (+) False LOC120552265
TU295664 other upstream 68192 8556216 ~ 8557253 (+) True G218445
XR_005638067.1 other downstream 107602 8738575 ~ 8738642 (+) True LOC120552752
XR_005638015.1 other downstream 580945 9211918 ~ 9230163 (+) False rnpc3
TU295977 other downstream 745971 9376944 ~ 9378147 (+) True G218694
TU295978 other downstream 827210 9458183 ~ 9458700 (+) True G218695
unassigned_transcript_1412 other downstream 1601513 10232486 ~ 10232557 (+) True trnac-gca_34

Expression Profile