RNA id: XM_039790940.1


Basic Information

Item Value
RNA id XM_039790940.1
length 3442
RNA type mRNA
GC content 0.51
exon number 26
gene id LOC120552716
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 2624686 ~ 2672738 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGCGGACCCCGCAGCGCAGACCACCATCAAGGTTGTGTGCCGTTTCAGGCCGCTGAACAAATCGGAGTTGGCTCGGGGGGACAAGTACATCCCGACATTTCAAGGGGACGACTGCGTGCAGATTGCGGGTAAACCGTACCACTTTGACCGCGTGTTCCAGTCCAATACAACTCAGGTGCAGTTCTACAACGCTGTGGCTCAGCAGATTGTCAGAGATGTGCTAGGGGGCTACAATGGGACAATATTTGCCTATGGgcagacatcctctggtaaaacacacacaatggagGGAGATCTCCACGACCCAGAGATGATGGGAATCATTCCCAGAATTGTTCAAGACATCTTCAACTACATTTATTCCATGGATGAGAACCTGGAGTTTCACATCAAAgtttcatattttgaaatctATTTGGACAAAATCAAGGACTGCTTGGATGTGTCAAAGATCAACCTGTCTGTACACGAAGATAAAAACAGGGTGCCCTATGTCAAGGGGTGTACCGAGCGTTTTGTGAGCACTCCTGAGGAGGTCATGGATGCCATAGACGAAGGCAAAAACAACCGGCATGTGGCTGTCACAAacaTGAACGAGCACAGTTCCAGGAGTCACAGCATCTTCCTCATCAACATCAAGCAGGAAAACTCTCAGACTGGACAGAAATTCACCGGCAAGCTCTACCTGGTGGATCTGGCTGGTAGTGAAAAAGTGGGTAAAACGGGAGCAGAGGGCACTGTGCTGGATGAAGCCAAGATGATCAACAAGTCCCTGTCTTCACTGGGAAATGTCATTTCAGCTCTGGCAGAGGGCTCGAGCTATGTGCCGTACAGAGACAGTAAGATGACCAGGATCCTGCAGGACTCCCTGGGAGGGAACTGTCGGACCACCATGGTCATCTGCTGCTCCCCCTCCGCTTTTAACGACGCTGAGACCAGGTCCACACTACTGTTCGGACagagGGCAAAGACCATCAAGAACACGGTGAGTCTGAATGTGGAGCTGACTGCAGAGCAGTGgaagaaaaagtgggagaaagagaaggagaagaacAAGACGCTGAAAAACACCGTCACCTGGCTGGAGGCCGAGCTCAACCGCTGGAGGAGTGGAGAGAGTGTGCCAGTGGAGGATCAGTTTGATAAAGAAAAGGCCAAAGCGGAGGTCCAGGCCCTGGACAGTGCGCTCAGCAACGATAAGACAGCACCCACACCTGCCCTCAGCACCCTCCCTGGAGTCCAACTCACAGATGCAGAGAAAGAGAAGTATGTTGCAGAAATGGCCAAGCTATACAAAGAGATGGATGACAAGGACGATGAGATCAACCAGCAGTCTCAAATGATGGAGTCGCTGAAGCAACAGATGTTGGACCAGGAGGAGCTCTTAGCGTCCTCCCGCCGGGACCATGACACCCTGCAGACGGAACTCAACCGGCTGCTGTCGGAGAACGAAGCCTCCAAGGAGGAGGTGAAGGAGgtgctgcaggccctggaggaGCTGGCTCTCAACTATGACCTCAAGAGTCAGGAAGTCGAGGACAAGGCGCAAGAGTTTGAGGCTCTCAGTGAGGAGCTGAACGAGAAATCgAGCTccttggcctccattgactctGAGCTCCAGAAGCTGAAGGAGATGACCATCCACCAGAAGAAGAGGTTCACTGAGATGATGTCATCACTACTCAAAGACCTGGCCGAGATCGGCATCGCCGTGGGGAGCAATGACATTAAGCAACAAGAGAGCAGTGGTCTGATTGACGAAGAGTTCACGATGGCGCGTCTCTACATCAGCAAGATGAAGTCGGAGGTGAAGACGATGGTGAAGCGCAGCAAACAGCTGGAGAGCTCCAAGGCCGAGAGCAGCCAGAAGATGGATGAGACGGAGATGGAGCTGATTGCCTGCCAGCTCCGTGTCTCCCAGCATGAAGCTAAAATCAAGTCCCTGACAGACACCCTCCAGAATGTGGAGCAGAAGAAAAGACAGCTGGAGGAAACGGTGGACTCTCTCAATGAGGAAATAGTCAGGATCAAAGCCCAAGAGAAAGTCAACACCATGGAGAAGGAGAATGAGATCCAGTCTGCCTATGAAGTCAAGgaAGCTGTGGAGATGCAGATCCAGTCTCACAGGGAGGCCCATCAGAAACAGATCAGCAGCCTGAGAGACGAGCTGGACAACAAGGATAAACTCATGACAGAACTACAGGATCTGAACCAAAAGATCATGCTGGAGCAGGAGAGGCTGAGGGTGGAGCACGAGAAGCTCAAGGCTGCCGACCAGGAGAAGAGCCGCCAGCTGCAGGAGCTCACGGTGTTGCAGGACAGGCGGGAGCAGGCCAAACAGGACCTGAAGGGACTGGAAGAGACTGTGGCCCGAGAGCTGCAGACACTCCACAACCTCAGGAGGCTTTTTGTCCAAGACTTGGCCACTCGAGTCAAAAAGAAGGCTCAGACGGACTCAGATGACACAGAAGACAGCGCTGCCCAGAAACAGAAGATCTGCTTCCTGGAGAGCAATCTCGCGCAGCTCACCAAAGTTCACAAGCagCTGCTACGGGACAATGCCGACCTCCGCGGCGAGCTGCCTAAACTTGAGAAGCGCCTGCGGGCCACGGCTGAGCGGGTCAAAGCCCTGGAGGCGGCTCTGCGGGAGGCCAAAGAGAACGCAGCCCACGACCGAAAGCGCTACGAGGAGGAGATGGGGCGCATTAAGGACGCTGTCAAGCCCAAAAACATGGGCAGGAGAGCCTCCATAGCCAAGCCCATCAGGCCAGGCCAGCTGCCAGGAGCATCTCCCTTGAACCCCAGCGTCAACCGGTCCAACCTCATCCAGAACAGCCAGCCAGCCGGCATCAAGGGAGGAGGCAACAACAGCCCCTGAGGATGGAGCACAGTCACAACAAACTCCAAAACCCAGAGACCTTTCCATTCCCAAATACTGAACTTTCACCTGGAACCACTGCGCCATTCTTCCAACATCAAAGTGTGTATATGCTGTATACAAGTATGGCATGTACTGTGCAGTCCTTCAAGCCTCTACAAGACAACCGGACCACATTAGTGCCTTGCAAATTTAACACATAATGTCACAAGTTCTGTAGACAGCAACTTACTAAGATATTAGTCTACACTGTGCCAACATGAATAAGAAGATGCTACAGTCATGCTGTACAGTGAAGAGAGAGCACTGGTTTCTCTAtgctttgtttttaatatttctcAGGGGTGCACCAGATACTTCTCTGCCTGTACATCATTATGTGCAGATTATTGTAATAATCTGTTTTAAACATCCAAAAGTGTCTTTAACTACACATTGGTGGTTTAGAATTCTTCTCCACTTTCTTCGCTGGGTGATTGAGAAcagaggctacatttacattgctacgtttcagtttaaaaattaatatcttttgcattatgcattccccctgctctggcgt

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007018 microtubule-based movement biological_process
GO:0005871 kinesin complex cellular_component
GO:0005874 microtubule cellular_component
GO:0005524 ATP binding molecular_function
GO:0003777 microtubule motor activity molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU294360 lncRNA upstream 61202 2563663 ~ 2563878 (+) True G217489
TU294312 lncRNA upstream 187200 2431757 ~ 2437880 (+) False G217449
XR_005637954.1 lncRNA upstream 208614 2409885 ~ 2416466 (+) True LOC120552009
XR_005637951.1 lncRNA upstream 269724 2352859 ~ 2355356 (+) True LOC120552006
TU294334 lncRNA upstream 269985 2352835 ~ 2355095 (+) False LOC120552006
TU294510 lncRNA downstream 329112 3001850 ~ 3003104 (+) True G217604
TU294518 lncRNA downstream 336451 3009189 ~ 3011361 (+) True G217608
TU294519 lncRNA downstream 336451 3009189 ~ 3011592 (+) False G217608
TU294520 lncRNA downstream 336451 3009189 ~ 3011592 (+) False G217608
TU294530 lncRNA downstream 355932 3028670 ~ 3029018 (+) True G217615
XM_039790086.1 mRNA upstream 9179 2567665 ~ 2615901 (+) True gfod1
XM_039789659.1 mRNA upstream 66454 2458659 ~ 2558626 (+) False slc12a7b
XM_039790616.1 mRNA downstream 6898 2679636 ~ 2772686 (+) True arhgap12b
XM_039790617.1 mRNA downstream 6898 2679636 ~ 2772686 (+) False arhgap12b
XM_039790619.1 mRNA downstream 6898 2679636 ~ 2772686 (+) False arhgap12b
XM_039790618.1 mRNA downstream 6899 2679637 ~ 2772686 (+) False arhgap12b
XM_039790620.1 mRNA downstream 6899 2679637 ~ 2772686 (+) False arhgap12b
TU294210 other upstream 949680 1669162 ~ 1675400 (+) False G217377
TU294211 other upstream 949680 1671847 ~ 1675400 (+) True G217377
unassigned_transcript_1282 other upstream 973432 1651577 ~ 1651648 (+) True trnan-guu_46
unassigned_transcript_1281 other upstream 973940 1651067 ~ 1651140 (+) True trnan-guu_45
unassigned_transcript_1280 other upstream 975409 1649598 ~ 1649671 (+) True trnan-guu_44
TU294514 other downstream 333545 3006283 ~ 3021642 (+) True G217606
unassigned_transcript_1283 other downstream 495005 3167743 ~ 3167824 (+) True trnas-aga_12
unassigned_transcript_1284 other downstream 496049 3168787 ~ 3168858 (+) True trnag-ucc_35
unassigned_transcript_1285 other downstream 496347 3169085 ~ 3169166 (+) True trnas-aga_13
unassigned_transcript_1286 other downstream 508560 3181298 ~ 3181369 (+) True trnag-ucc_36

Expression Profile