RNA id: XM_039790973.1


Basic Information

Item Value
RNA id XM_039790973.1
length 2676
RNA type mRNA
GC content 0.47
exon number 17
gene id zgc:56231
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 8741089 ~ 8750456 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTAACACGCTCCCATTGTTCTCAGTGGAAGAACGTCAGCAGACCCGCATGTACTGTAGGTGAAATAAGTCGGTTTTTAAGGCCAACATTTTCTGTGAATTGTCTTCCAAAGAGTCAGGGGCTTTGTTCAGTACATTTAGGGAATTAATACATGACGTGATGGAGGGGTCTTGCCTCGAGATGAGTACAGTTAATTTCAGCTATGAAAATAGCGTCGATATGCAGTATGTTGACATGGACATCACTTGTAATACTCCTGTCAGCACTTCATCCCGGcagGATTGTATAGTGATTGAAAACAGCCAGACGGTGACACTAAATGCACCAAAGGGTTCTGCCACCATGAAGAGCAGTGAGAAGGGCGTCGGCATGTCTCTTCACAAATTCTCCTTCTCACAGATTTTTGGACCAGAGATGACACAGTCAGAGCTGTTTGAGGACACTGTCAAAAGCCAAATGTGTGACTTCTTAGAAGGGAAGAATGCACTAATATTCAGCTATGGTGTAACCAATGCTGGGAAAACCCACACAATCCAAGGAACTCCAAAAGAGCCGGGAATACTCCCTCGAGTGCTGGACGCCACCTTTCACTACATTGGAAGCCATGTGTATGAGGGGATGGACCTGAAACCCTACCACAGAAATGATGCACAACATCTGGATCCTGACCAAGTCAAGCAGGAGAGAAGTGCTAAAGCTGCCATTTTTGCTTCAGTCAaagaaGCGTGTGATCCTCTCCGAGCCAGTGGTGGTTTAGAGTCCCCTTCCTGTTCCGCCACCATTCTCTCATCCTCTTTGTTCTACGATCAAACCGTGTCGGCAAGCAACCTAACAGAAGCAGACAGCAGCCAGTTTACATTATGGGTGGCATTCTTTGAAATCTACAATGAGCTTGTATATGATCTGCTTCAGCCTTCCCTGTGCTCAAAGTCCAAGAAACGCGCTGCTCTTCGAGTGTGTGACGATGGTGCTGGAAACGCTTATGTTAAAGATCTGAGGTGGATTAATATCCAGACCATGGGCGAAGCCTCCAAACTACTACAGTTCGGAAACAGAAACCGAAGTGCTGCAGCCACAAAGATGAACCAGTCGTCTAGCAGAAGCCACAGCATATTTACCATGAAGTTACTGAAGATTGATGGCAGTACAGTTAAAAGGATCTCGGAGTTTTCTCTGTGTGACCTGGCTGGCTCCGAAAGATGCAACAAAACCAAGACATTCGGGGAGAGGCTGAAGGAGGCGGCGAACATAAACAACTCTCTGCTCACTTTGGGGAAGTGCATCACTGCCCTTCGCAacaatcagacagacagAATGAAGAGCAGCTACATTCCTTTCAGAGAGAGTAAGCTCACCAAGCTCTTCCAGAATGTTTTCTGCGGCAAAGGAAGTGCGTCGATGATCGTCAACATTAACCAGTGCGCTTCCACCTACGACGAGACTCTCCACGTTATGAAATTCTCTGCTGTTGCCAAACAGGTGGTGCAGGTTATTCCAGACAAGCCTCTGGAAGCTCTGGCTCCTTGTTTGGTCGGCCACGATGGCAAGCCTTTGGTGAGGAATGGGGTGGTTGACAGCCAGGCCTTGGAGAGCTACCTGTCTGAGGAGGAGCAGCTGGATGATGAGGAAGACGAGGCGGACATGTCTGTGCTGCCACAGAATGAGCTCGTAAATATGATTGAGAGTCTGCGAACAAAATTCCTGGCTGAGCGAAGAAGACACCTAGTTCAGGAAATGGAGATTCGGAAGGAAATGGGAGATGCCATGTTACAGCAGCTCATGGAGAGTGAAGAACTCCGCACTCGACAGGTAGAAGAGCTGAAGGAGAGCTACCAAGTAAAGTTGGAGAACACTTTTGAAATGTACAAGGATGCTTTCAAAGAGCACGCCTACCAGAGTGCTATGAACAATCTGGAAGATGACTATGTACCACTTGACGAGTTCATCGCTGAACAGGAGAAAGTGGAGGCCCTGAAACGTAAAGTGTCAGAGTTGGAGACCTTAACGTCCAGTGTGAAAGGAAGCGTCTGTGCACATCCAACAGTGGACCAGTCGTGCCAGACTAACGCGACAGAAGCAGCAGACGATCGATGCGAACGgctttacaaagaaaaatgtgGCTTAGAGAGGATATGTGAGGATAAACAACAGTTGGTTCTGTCCCTAGAGAAAAGGCTGATGGAGGTTAGTGAAACACTTCAGAAGATCAGTGCTGGCTTCCTGGAGAAATCGGCTGATCTGGAGGTTTTGCAGAGACGCTGTGATGATCAGAACAAATCTATGGATGACATCATACAGCAGAATGTTGAAAAGGACAGGGAGCTTGACTCCCTTAAGGGAGAACTTGCCAAGCTTTCCCAGAAGTCCCCTGTGAAGCTCAAAACCAAGCGAGGCCTGCTTGCCAACATCAGGGAGGCTGTGACTTCTCCACGGAAGAATTCAACTGGCCGAACGCTCAGGAAAACCGTTCGGGCTGTACATCACTGACAAGCCCAGCATCTGGAGAAAAGGAGGGAGATTCctttttggtttttaaaaacTTAGCATGGGTCGTTTCAGGATGCCTGGAAAGGAATCTGCAAGCGTGACACCTTATTTTATTCAGGTGGAGTGGGTTTTTTAAGATGGCATTTttatgttgtatgtgttttaataaaatgagaTCGCTCAAACCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295784 lncRNA upstream 12876 8726772 ~ 8728214 (+) True G218537
TU295773 lncRNA upstream 20022 8713346 ~ 8721068 (+) True LOC120552042
TU295775 lncRNA upstream 20022 8713346 ~ 8721068 (+) False LOC120552042
XR_005637956.1 lncRNA upstream 20105 8713303 ~ 8720985 (+) False LOC120552042
TU295770 lncRNA upstream 79122 8661606 ~ 8661968 (+) True G218528
XR_005638010.1 lncRNA downstream 21360 8771816 ~ 8775851 (+) True LOC120552459
TU295833 lncRNA downstream 40884 8791340 ~ 8791961 (+) True G218581
TU295842 lncRNA downstream 46394 8796850 ~ 8797078 (+) True G218589
TU295915 lncRNA downstream 267150 9017606 ~ 9017845 (+) True G218651
TU295927 lncRNA downstream 338803 9089259 ~ 9092094 (+) True G218660
XM_039789688.1 mRNA upstream 1188 8737112 ~ 8739902 (+) True rps20
XM_039790922.1 mRNA upstream 110117 8625445 ~ 8630973 (+) True pigm
XM_039790154.1 mRNA upstream 144734 8587023 ~ 8596356 (+) False LOC120552265
XM_039789529.1 mRNA downstream 464 8750920 ~ 8755753 (+) True LOC120551930
XM_039790547.1 mRNA downstream 6188 8756644 ~ 8763376 (+) True mcur1
XM_039790549.1 mRNA downstream 6191 8756647 ~ 8763376 (+) False mcur1
XM_039790546.1 mRNA downstream 13290 8763746 ~ 8768202 (+) True dph2
XM_039790550.1 mRNA downstream 29950 8780406 ~ 8788701 (+) True garem
XR_005638067.1 other upstream 2448 8738575 ~ 8738642 (+) True LOC120552752
TU295657 other upstream 134512 8550783 ~ 8606578 (+) False G218441
XR_005638015.1 other downstream 461462 9211918 ~ 9230163 (+) False rnpc3
TU295977 other downstream 626488 9376944 ~ 9378147 (+) True G218694
TU295978 other downstream 707727 9458183 ~ 9458700 (+) True G218695
unassigned_transcript_1412 other downstream 1482030 10232486 ~ 10232557 (+) True trnac-gca_34
TU296163 other downstream 1672130 10422586 ~ 10423249 (+) True G218848

Expression Profile