RNA id: XM_039790974.1


Basic Information

Item Value
RNA id XM_039790974.1
length 2498
RNA type mRNA
GC content 0.48
exon number 18
gene id zgc:56231
representative False

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 8741089 ~ 8750456 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATTAACACGCTCCCATTGTTCTCAGTGGAAGAACGTCAGCAGACCCGCATGTACTGTAGGTGAAATAAGTCGGTTTTTAAGGCCAACATTTTCTGTGAATTGTCTTCCAAAGAGTCAGGGGCTTTGTTCAGTACATTTAGGGAATTAATACATGACGTGATGGAGGGGTCTTGCCTCGAGATGAGTACAGTTAATTTCAGCTATGAAAATAGCGTCGATATGCAGTATGTTGACATGGACATCACTTGTAATACTCCTGTCAGCACTTCATCCCGGcagTCTGTAGTGCCAGGCGGTGCTGAGCAGCAGACTATGAGAGTTTACCTCCGAGTCAGGCCCTTCTCTAAAGGGGAGCTCGCTGACAACGAGGATCAGGATTGTATAGTGATTGAAAACAGCCAGACGGTGACACTAAATGCACCAAAGGGTTCTGCCACCATGAAGAGCAGTGAGAAGGGCGTCGGCATGTCTCTTCACAAATTCTCCTTCTCACAGATTTTTGGACCAGAGATGACACAGTCAGAGCTGTTTGAGGACACTGTCAAAAGCCAAATGTGTGACTTCTTAGAAGGGAAGAATGCACTAATATTCAGCTATGGTGTAACCAATGCTGGGAAAACCCACACAATCCAAGGAACTCCAAAAGAGCCGGGAATACTCCCTCGAGTGCTGGACGCCACCTTTCACTACATTGGAAGCCATGTGTATGAGGGGATGGACCTGAAACCCTACCACAGAAATGATGCACAACATCTGGATCCTGACCAAGTCAAGCAGGAGAGAAGTGCTAAAGCTGCCATTTTTGCTTCAGTCAaagaaGCGTGTGATCCTCTCCGAGCCAGTGGTGGTTTAGAGTCCCCTTCCTGTTCCGCCACCATTCTCTCATCCTCTTTGTTCTACGATCAAACCGTGTCGGCAAGCAACCTAACAGAAGCAGACAGCAGCCAGTTTACATTATGGGTGGCATTCTTTGAAATCTACAATGAGCTTGTATATGATCTGCTTCAGCCTTCCCTGTGCTCAAAGTCCAAGAAACGCGCTGCTCTTCGAGTGTGTGACGATGGTGCTGGAAACGCTTATGTTAAAGATCTGAGGTGGATTAATATCCAGACCATGGGCGAAGCCTCCAAACTACTACAGTTCGGAAACAGAAACCGAAGTGCTGCAGCCACAAAGATGAACCAGTCGTCTAGCAGAAGCCACAGCATATTTACCATGAAGTTACTGAAGATTGATGGCAGTACAGTTAAAAGGATCTCGGAGTTTTCTCTGTGTGACCTGGCTGGCTCCGAAAGATGCAACAAAACCAAGACATTCGGGGAGAGGCTGAAGGAGGCGGCGAACATAAACAACTCTCTGCTCACTTTGGGGAAGTGCATCACTGCCCTTCGCAacaatcagacagacagAATGAAGAGCAGCTACATTCCTTTCAGAGAGAGTAAGCTCACCAAGCTCTTCCAGAATGTTTTCTGCGGCAAAGGAAGTGCGTCGATGATCGTCAACATTAACCAGTGCGCTTCCACCTACGACGAGACTCTCCACGTTATGAAATTCTCTGCTGTTGCCAAACAGGTGGTGCAGGTTATTCCAGACAAGCCTCTGGAAGCTCTGGCTCCTTGTTTGGTCGGCCACGATGGCAAGCCTTTGGTGAGGAATGGGGTGGTTGACAGCCAGGCCTTGGAGAGCTACCTGTCTGAGGAGGAGCAGCTGGATGATGAGGAAGACGAGGCGGACATGTCTGTGCTGCCACAGAATGAGCTCGTAAATATGATTGAGAGTCTGCGAACAAAATTCCTGGCTGAGCGAAGAAGACACCTAGTTCAGGAAATGGAGATTCGGAAGGAAATGGGAGATGCCATGTTACAGCAGCTCATGGAGAGTGAAGAACTCCGCACTCGACAGGTAGAAGAGCTGAAGGAGAGCTACCAAGTAAAGTTGGAGAACACTTTTGAAATGTACAAGGATGCTTTCAAAGAGCACGCCTACCAGAGTGCTATGAACAATCTGGAAGATGACTATGTACCACTTGACGAGTTCATCGCTGAACAGGAGAAAGTGGAGGCCCTGAAACGTAAAGTGTCAGAGTTGGAGACCTTAACGTCCAGTGTGAAAGGAAGCGTCTGTGCACATCCAACAGTGGACCAGTCGTGCCAGACTAACGCGACAGAAGCAGCAGACGATCGATGCGAACGgctttacaaagaaaaatgtgGCTTAGAGAGGATATGTGAGGATAAACAACAGTTGGTTCTGTCCCTAGAGAAAAGGCTGATGGAGGTTAGTGAAACACTTCAGAAGATCAGTGCTGGCTTCCTGGAGAAATCGGCTGATCTGGAGGTTTTGCAGAGACGCTGTGATGATCAGGTGAGATGATTTCAAGAACAAATCTATGGATGACATCATACAGCAGAATGTTGAAAAGGACAGGGAGCTTGACTCCCTTAAGGGAGAACTTGCCAAGCTTTCCCAGAAGTCCCCTGTGAAGCTCAAAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295784 lncRNA upstream 12875 8726772 ~ 8728214 (+) True G218537
TU295773 lncRNA upstream 20021 8713346 ~ 8721068 (+) True LOC120552042
TU295775 lncRNA upstream 20021 8713346 ~ 8721068 (+) False LOC120552042
XR_005637956.1 lncRNA upstream 20104 8713303 ~ 8720985 (+) False LOC120552042
TU295770 lncRNA upstream 79121 8661606 ~ 8661968 (+) True G218528
XR_005638010.1 lncRNA downstream 21651 8771816 ~ 8775851 (+) True LOC120552459
TU295833 lncRNA downstream 41175 8791340 ~ 8791961 (+) True G218581
TU295842 lncRNA downstream 46685 8796850 ~ 8797078 (+) True G218589
TU295915 lncRNA downstream 267441 9017606 ~ 9017845 (+) True G218651
TU295927 lncRNA downstream 339094 9089259 ~ 9092094 (+) True G218660
XM_039789688.1 mRNA upstream 1187 8737112 ~ 8739902 (+) True rps20
XM_039790922.1 mRNA upstream 110116 8625445 ~ 8630973 (+) True pigm
XM_039790151.1 mRNA upstream 144733 8584019 ~ 8596356 (+) True LOC120552265
XM_039789529.1 mRNA downstream 755 8750920 ~ 8755753 (+) True LOC120551930
XM_039790547.1 mRNA downstream 6479 8756644 ~ 8763376 (+) True mcur1
XM_039790549.1 mRNA downstream 6482 8756647 ~ 8763376 (+) False mcur1
XM_039790546.1 mRNA downstream 13581 8763746 ~ 8768202 (+) True dph2
XM_039790550.1 mRNA downstream 30241 8780406 ~ 8788701 (+) True garem
XR_005638067.1 other upstream 2447 8738575 ~ 8738642 (+) True LOC120552752
TU295657 other upstream 134511 8550783 ~ 8606578 (+) False G218441
TU295656 other upstream 134511 8600960 ~ 8606578 (+) True G218441
TU295658 other upstream 135266 8600960 ~ 8605823 (+) False G218441
TU295651 other upstream 159962 8549870 ~ 8581127 (+) False LOC120552265
XR_005638015.1 other downstream 461753 9211918 ~ 9230163 (+) False rnpc3
TU295977 other downstream 626779 9376944 ~ 9378147 (+) True G218694
TU295978 other downstream 708018 9458183 ~ 9458700 (+) True G218695
unassigned_transcript_1412 other downstream 1482321 10232486 ~ 10232557 (+) True trnac-gca_34
TU296163 other downstream 1672421 10422586 ~ 10423249 (+) True G218848

Expression Profile