RNA id: XR_005637946.1


Basic Information

Item Value
RNA id XR_005637946.1
length 877
lncRNA type inter_gene
GC content 0.48
exon number 5
gene id LOC120551974
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 79571 ~ 102133 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aacggtaaaatgctgtgttgtattaaaaaaaaagaaggatttttttctaatctaatgcttattacagCCTGAGCCATACCAGAAAGGCTTCCCGCCCAAAAGACGCCACCATTCCTTTGTTCCGGTCTCATCTTACCCGgccactgtatcttatgatcctaacaccgctgcagagcAACTAAAGGCTACGGAAGACTTAGTTTCATTGTATTTGACGCCTGAGGACGATTTCACACAGTCACCCCCATGGAGCAGAAACGGATGTCTACACAAGCCTAAGAAGGGATCTAAGAAGAGATCTATTGAGCCTGAGAAGCCATACATGGACGGTCTCCCGCCCAAAAGACGCCGCCCTTCCTTTGTTCCAGACTCCTCTTACAAGGCCTCTGTATCTTATGTTCCTAACACActtgcagagACAATCCATGCCGTAGAAGCCggagaagggtctgaagacacAGGACTAACAGCAACAGCACCTACATACCACCAACCAAATCGGGGAGCTACAggagaagggtctgaagacacAGGACTAACAGCGGCAGCGCCTACATCCCCCCAACCAAATCGGGGAGCTACAggagaagggtctgaagacacCGGACTAGCAGAGACACCGCTTACAGCCCACCAATCGAGTCAGGCATCTTTGCAGGCGGTCCCTGAATATAATGTGGTCCGATAGCTGATAGAGAGCTCTACAGAGAGGAAAACTGGCTAACCACAGAAAGCCTGTGCTGTGAGGACATTGCACTGATGAAGCATACAGCTGATGAAGCAATTGTCAAGGAGAAGATGAAGCAGACCTTCAGCTATCGTCAAAAGATGGTTCATGACCCAATTAAGGCCTCTGAAATATTCACAGCTTTTCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638062.1 lncRNA downstream 41445 35892 ~ 38126 (-) True LOC120552669
XR_005637947.1 lncRNA upstream 7 102140 ~ 102997 (-) True LOC120551975
TU294027 lncRNA upstream 55425 157558 ~ 158565 (-) True G217219
TU294029 lncRNA upstream 111725 213858 ~ 214057 (-) True G217221
TU294037 lncRNA upstream 307265 409398 ~ 410145 (-) True G217229
TU294039 lncRNA upstream 345651 447784 ~ 448010 (-) True G217231
XM_039790874.1 mRNA upstream 192178 294311 ~ 401826 (-) True vstm2a
XM_039789542.1 mRNA upstream 1096476 1198609 ~ 1200210 (-) True LOC120551945
XM_039789537.1 mRNA upstream 1219305 1321438 ~ 1332410 (-) True LOC120551939
XM_039789599.1 mRNA upstream 1253355 1355488 ~ 1448275 (-) True si:dkey-225n22.4
XM_039789605.1 mRNA upstream 1405603 1507736 ~ 1536190 (-) True ift74
unassigned_transcript_1299 other upstream 3207366 3309499 ~ 3309570 (-) True trnag-ucc_41
XR_005638064.1 other upstream 3214315 3316448 ~ 3343705 (-) False LOC120552696
unassigned_transcript_1300 other upstream 3472598 3574731 ~ 3574828 (-) True trnar-ucu_17
unassigned_transcript_1301 other upstream 3472943 3575076 ~ 3575173 (-) True trnar-ucu_18
unassigned_transcript_1302 other upstream 3473629 3575762 ~ 3575859 (-) True trnar-ucu_19

Expression Profile