RNA id: XR_005637971.1


Basic Information

Item Value
RNA id XR_005637971.1
length 917
lncRNA type inter_gene
GC content 0.50
exon number 8
gene id LOC120552179
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 24928324 ~ 24954497 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTCCTGGAGGAAGGCCAGCCCCTTCTGCCCCTCCCACCATGAGATCTTCTGGCCCTGAACTCGACGCCCAGCGGAGACGGGAGCtgcggaaaaaaaacaaacccaacCGGAGAAACATCACAAGCTAGAAGGTCTACCCAGCAGCCTTTTGATGGCTTTAACCCTGAACTGAAATCTGGATCAGGAATAAGAAGGAGCCTCCATGTTCAGGCTTTGACCTGAAGGGCGAGTGTTTGTGCAAGGAAGAGCAAAGAAGAGGACCAAaacaagaaaagacagaaacagagagccAACTCTTTGATATCCAGCGAGGAGTTTTAAAGTCAACATGGTCAACAACGTCCTTCAAGAGTTCAGAAACGAAATCTACAACAGCCGGGCAAACGCCATCTGCTGATCGTGTGATACGATCATCGCTCCAGAACAGCTGTTGAATGGACCTTGTGCGGCAGCCAGGTTTCCCCCGGCGCTgtccccagacacacacaccctctccgGATCGATGCTGTAGCGCTCCAAAACCTGAGCCGACAGGAAGGCCCGCGATGCCGCTAACGCATCGTGGTACTGATCTGGGAACACCGCCTCTGGAGCGAGACGATTTGATGTCCCCAAAGCATGTAATTTCAACTCTGATCCATACCTCACAGCTTTCATTGGCTTAACCATCTCCATGAGAACTGAACTCCATCCATTTGTCCAAGAACTTACTCCACGGACATGATGACAGAGTCCAGCTCCTCCGCCATTTTCCGACAAAGAAGGTCGTACGATCGCATCCCTGCGAAGCAGGCAGACTCGATAAGTCATGTCAACAATAATGTACGTGTTATATGTCATATTGGTTGAATACAGGGATgaattttccttcttttctgcaGCTGTCAGAGTTTTTCAAATCAACACTCACTCCCGC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0052689 carboxylic ester hydrolase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637972.1 lncRNA downstream 23624 24895018 ~ 24904700 (-) False LOC120552180
TU301971 lncRNA downstream 30105 24894572 ~ 24898219 (-) True LOC120552180
TU300458 lncRNA downstream 130708 24796812 ~ 24797616 (-) False avl9
TU300456 lncRNA downstream 132974 24794866 ~ 24795350 (-) True G222088
TU300416 lncRNA downstream 318645 24609461 ~ 24609679 (-) True G222062
TU301975 lncRNA upstream 42129 24996626 ~ 25023914 (-) True G223155
TU302004 lncRNA upstream 52992 25007489 ~ 25011818 (-) True G223181
TU302017 lncRNA upstream 79579 25034076 ~ 25034364 (-) True G223184
TU302016 lncRNA upstream 79616 25034113 ~ 25034364 (-) False G223184
TU302038 lncRNA upstream 243849 25198346 ~ 25199030 (-) True G223193
XM_039789974.1 mRNA downstream 5152 24918372 ~ 24923172 (-) True emc9
XM_039790848.1 mRNA downstream 58490 24862510 ~ 24869834 (-) True psme2
XM_039790308.1 mRNA downstream 73436 24796589 ~ 24854888 (-) True avl9
XM_039790218.1 mRNA downstream 150519 24771906 ~ 24777805 (-) False LOC120552302
XM_039790943.1 mRNA upstream 8920 24963417 ~ 24968106 (-) True msl2b
XM_039790082.1 mRNA upstream 81387 25035884 ~ 25086902 (-) True LOC120552232
XM_039790085.1 mRNA upstream 138080 25092577 ~ 25179568 (-) False LOC120552233
XM_039790083.1 mRNA upstream 138080 25092577 ~ 25179568 (-) True LOC120552233
XM_039790084.1 mRNA upstream 139268 25093765 ~ 25179568 (-) False LOC120552233
TU300141 other downstream 2709958 22202783 ~ 22218366 (-) False smpx
TU300142 other downstream 2710775 22202783 ~ 22217549 (-) True smpx
XR_005637957.1 other downstream 2919236 21990017 ~ 22009088 (-) True tfr1b
TU299660 other downstream 4065659 20836297 ~ 20862665 (-) False LOC120552536
TU299133 other downstream 5601430 19315591 ~ 19326894 (-) True G221048
TU301970 other upstream 8948 24963445 ~ 24967990 (-) False msl2b
TU302014 other upstream 102096 25056593 ~ 25086708 (-) False LOC120552232
TU302146 other upstream 601976 25556473 ~ 25562540 (-) True LOC120552299
TU302187 other upstream 776259 25730756 ~ 25738884 (-) False LOC120552722
TU302229 other upstream 873594 25828091 ~ 25834224 (-) False mynn

Expression Profile