RNA id: XR_005637987.1


Basic Information

Item Value
RNA id XR_005637987.1
length 464
lncRNA type inter_gene
GC content 0.53
exon number 3
gene id LOC120552334
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 9174102 ~ 9185369 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agtgcagctgtgtgtgtgacaggggGGCTTGATATGGAAAGTACTTCAAAGATAAACCTTAAGAAACCACGAGAAAAGTTAAACACAGATCAGCAGGGTCTGTATGTGCAGCCTTTTGTGATACATTGCTGGGAGGTGCTGAGGTAGAGAGGACAGGAGCGCTTGATGCTACATGACTGGGCTGTGCCGAGCTGGATGGGACAGGGGAAACTGATGCTGCATCGCTGGGCTTGTCTGAGGTAGACGGGACAGGAGCGCTTGATGCTACATGACTGTGCTGAGCTGGAGGAGACGGGGGAAACTGATGCTGTATCGCTGGGCTTGTCTAAAGTAGAGGGGACAGGAGTGCTTGATGCTGCATCACTGGAAGGTGCTGAGGTGGAGTGGACAGGAGAACTTGACGCTAAGATGGCCCAGGATTTGCAGGAAGggtgagcaactggaacagtgacaggacgtcatca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295944 lncRNA downstream 44456 9128022 ~ 9129646 (-) True G218671
TU295913 lncRNA downstream 177714 8996104 ~ 8996388 (-) True G218649
TU295908 lncRNA downstream 215969 8957663 ~ 8958133 (-) False LOC120551928
TU295899 lncRNA downstream 225015 8948220 ~ 8949087 (-) True G218640
TU295898 lncRNA downstream 233373 8939896 ~ 8940729 (-) True G218639
TU296026 lncRNA upstream 111668 9297037 ~ 9297238 (-) True G218735
TU296030 lncRNA upstream 189490 9374859 ~ 9375212 (-) True G218739
XR_005637928.1 lncRNA upstream 229597 9414966 ~ 9415451 (-) True LOC120551892
TU296033 lncRNA upstream 229597 9414966 ~ 9415331 (-) False LOC120551892
TU296036 lncRNA upstream 274985 9460354 ~ 9463042 (-) True G218745
XM_039790291.1 mRNA downstream 1078 9087151 ~ 9173024 (-) True col11a1a
XM_039790295.1 mRNA downstream 1078 9088509 ~ 9173024 (-) False col11a1a
XM_039790294.1 mRNA downstream 1078 9088509 ~ 9173024 (-) False col11a1a
XM_039790293.1 mRNA downstream 1078 9088509 ~ 9173024 (-) False col11a1a
XM_039790298.1 mRNA downstream 1079 9088509 ~ 9173023 (-) False col11a1a
XM_039789977.1 mRNA upstream 429471 9614840 ~ 9726073 (-) True LOC120552183
XM_039789978.1 mRNA upstream 429471 9614840 ~ 9726072 (-) False LOC120552183
XM_039789547.1 mRNA upstream 582223 9767592 ~ 9777716 (-) True nrros
XM_039789546.1 mRNA upstream 582223 9767592 ~ 9777715 (-) False nrros
XM_039789549.1 mRNA upstream 600810 9786179 ~ 9790167 (-) True fbxo45
TU295702 other downstream 743172 8430464 ~ 8430930 (-) True G218471
TU295672 other downstream 978223 8194929 ~ 8195879 (-) True G218453
unassigned_transcript_1411 other downstream 1832207 7341824 ~ 7341895 (-) True trnaw-cca_34
unassigned_transcript_1410 other downstream 1871335 7302696 ~ 7302767 (-) True trnaw-cca_33
unassigned_transcript_1409 other downstream 1872962 7301069 ~ 7301140 (-) True trnaw-cca_32
TU296313 other upstream 1392030 10577399 ~ 10669527 (-) True G218950
TU296891 other upstream 4004284 13189653 ~ 13194041 (-) False bmi1a
XR_005637977.1 other upstream 4503052 13688421 ~ 13696741 (-) True pdk3a
XR_005637996.1 other upstream 4639424 13824793 ~ 13940381 (-) False sema5a
TU297468 other upstream 5860779 15046148 ~ 15048663 (-) False xkr9

Expression Profile