RNA id: XR_005638000.1


Basic Information

Item Value
RNA id XR_005638000.1
length 544
lncRNA type inter_gene
GC content 0.47
exon number 6
gene id LOC120552439
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 25358648 ~ 25375501 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCCAGGCTGCTCCAGCGATATTGCTGCTAACGTTACATCAATTCACCTTTACAGGATGATGAGGATCCTTCAACTTCAGCTTCCTTTCTCTGGTGAAAGTAACCATGACGACGCTGACTAACATCTGTTATCTCTGGGCTGTGAACTCTTCACTCACCTCCTCTTGCAGGACTCAGAAAGGATCGTTTCTCGGCTTCAGGTTTCTTCTGTTGGATTTTCCCATCCATAGTCCAGCACCACATGTGCTCATGCTTTGTTAAAGTCCTCACCTCGCTGTCGTCATGGAGAAGTGAACTCACTGAAATCAGCAGCAAGAAAATGAGACGTTCATCCAGAAGAGGTTGTGCAGAAGTTTGAACCCTGTCTGGGATTGATGGTTTATGATTTCATGGTGCTCCTCAGCAGCACAGTGAGGAACTCTCTTTCTAAACTGTTGATAAATAACTCCTTGTTGCCAGTGATGGTGCTGGTGTAGCACTTGTATCTTCCCTGGTCCTGAACCTCCACCCCTGTCAACCGGAGCAAGGCGTTTCCTCTGGAGAT

Function

GO: NA

KEGG:

id description
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638006.1 lncRNA downstream 1678 25347787 ~ 25356970 (-) False LOC120552443
XR_005638005.1 lncRNA downstream 1678 25351886 ~ 25356970 (-) True LOC120552443
XR_005638007.1 lncRNA downstream 5894 25351886 ~ 25352754 (-) False LOC120552443
XR_005638002.1 lncRNA downstream 12696 25339252 ~ 25345952 (-) False LOC120552441
XR_005638003.1 lncRNA downstream 12696 25339252 ~ 25345952 (-) True LOC120552441
XR_005638004.1 lncRNA upstream 7042 25382543 ~ 25388149 (-) True LOC120552442
TU302129 lncRNA upstream 96219 25471720 ~ 25541442 (-) True G223252
XR_005637983.1 lncRNA upstream 181085 25556586 ~ 25562436 (-) False LOC120552299
TU302157 lncRNA upstream 202798 25578299 ~ 25582204 (-) True G223265
TU302163 lncRNA upstream 228769 25604270 ~ 25604783 (-) True G223269
XM_039789467.1 mRNA downstream 129104 25199062 ~ 25229544 (-) True LOC120551896
XM_039789468.1 mRNA downstream 129631 25199062 ~ 25229017 (-) False LOC120551896
XM_039790538.1 mRNA downstream 161115 25182212 ~ 25197533 (-) True LOC120552454
XM_039790541.1 mRNA downstream 163370 25182212 ~ 25195278 (-) False LOC120552454
XM_039790540.1 mRNA downstream 164421 25182212 ~ 25194227 (-) False LOC120552454
XM_039790459.1 mRNA upstream 39383 25414884 ~ 25427197 (-) False LOC120552403
XM_039790458.1 mRNA upstream 39383 25414884 ~ 25427197 (-) False LOC120552403
XM_039790457.1 mRNA upstream 39383 25414884 ~ 25427197 (-) True LOC120552403
XM_039790462.1 mRNA upstream 53737 25429238 ~ 25437142 (-) True chrnd
XM_039790460.1 mRNA upstream 63653 25439154 ~ 25461021 (-) True cip2a
TU302014 other downstream 271940 25056593 ~ 25086708 (-) False LOC120552232
TU301970 other downstream 390658 24963445 ~ 24967990 (-) False msl2b
TU300141 other downstream 3140282 22202783 ~ 22218366 (-) False smpx
TU300142 other downstream 3141099 22202783 ~ 22217549 (-) True smpx
XR_005637957.1 other downstream 3349560 21990017 ~ 22009088 (-) True tfr1b
TU302146 other upstream 180972 25556473 ~ 25562540 (-) True LOC120552299
TU302187 other upstream 355255 25730756 ~ 25738884 (-) False LOC120552722
TU302229 other upstream 452590 25828091 ~ 25834224 (-) False mynn
TU302230 other upstream 452590 25828091 ~ 25833625 (-) False mynn
TU302261 other upstream 608093 25983594 ~ 25993497 (-) False G223331

Expression Profile