RNA id: unassigned_transcript_1286


Basic Information

Item Value
RNA id unassigned_transcript_1286
length 72
RNA type tRNA
GC content 0.58
exon number 1
gene id trnag-ucc_36
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 3181298 ~ 3181369 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCGATGGTGGTATAGTGGTGAGCATAGCTGCCTTCCAAGCAGTTgacccgggttcgattcccggcCATCGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637993.1 lncRNA upstream 18222 3155185 ~ 3163076 (+) True LOC120552406
TU294533 lncRNA upstream 133873 3045392 ~ 3047425 (+) True G217618
TU294530 lncRNA upstream 152280 3028670 ~ 3029018 (+) True G217615
TU294519 lncRNA upstream 169706 3009189 ~ 3011592 (+) False G217608
TU294680 lncRNA downstream 279402 3460771 ~ 3461648 (+) False G217716
TU294683 lncRNA downstream 279402 3460771 ~ 3461648 (+) True G217716
TU294684 lncRNA downstream 279402 3460771 ~ 3461648 (+) False G217716
TU294710 lncRNA downstream 326688 3508057 ~ 3543785 (+) False G217723
TU294705 lncRNA downstream 329361 3510730 ~ 3514939 (+) True G217723
XM_039790273.1 mRNA upstream 245729 2878512 ~ 2935569 (+) True znf438
XM_039790618.1 mRNA upstream 408612 2679637 ~ 2772686 (+) False arhgap12b
XM_039790417.1 mRNA downstream 39246 3220615 ~ 3233822 (+) True LOC120552392
XM_039790124.1 mRNA downstream 101226 3282595 ~ 3306837 (+) False jcada
XM_039790125.1 mRNA downstream 101371 3282740 ~ 3306837 (+) True jcada
XM_039789899.1 mRNA downstream 220599 3401968 ~ 3433621 (+) True abcd3a
XM_039789898.1 mRNA downstream 220599 3401968 ~ 3433621 (+) False abcd3a
unassigned_transcript_1285 other upstream 12132 3169085 ~ 3169166 (+) True trnas-aga_13
unassigned_transcript_1284 other upstream 12440 3168787 ~ 3168858 (+) True trnag-ucc_35
unassigned_transcript_1283 other upstream 13474 3167743 ~ 3167824 (+) True trnas-aga_12
TU294514 other upstream 159656 3006283 ~ 3021642 (+) True G217606
TU294210 other upstream 1505898 1669162 ~ 1675400 (+) False G217377
unassigned_transcript_1287 other downstream 235 3181604 ~ 3181685 (+) True trnas-aga_14
unassigned_transcript_1288 other downstream 4416 3185785 ~ 3185856 (+) True trnag-ucc_37
unassigned_transcript_1289 other downstream 4740 3186109 ~ 3186180 (+) True trnaa-ugc_22
unassigned_transcript_1290 other downstream 10216 3191585 ~ 3191656 (+) True trnag-ucc_38
unassigned_transcript_1291 other downstream 10523 3191892 ~ 3191973 (+) True trnas-aga_15