RNA id: unassigned_transcript_1366


Basic Information

Item Value
RNA id unassigned_transcript_1366
length 73
RNA type tRNA
GC content 0.53
exon number 1
gene id trnaa-agc_24
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 4799175 ~ 4799247 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggggaattagctcaaatggtagagcgCTCGCTTAGCATGCGAGAGGTAGTGGGATCGATGCCCACATTCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295015 lncRNA upstream 36925 4759620 ~ 4762250 (+) True G217964
TU295016 lncRNA upstream 37514 4759620 ~ 4761661 (+) False G217964
TU295021 lncRNA upstream 143701 4655265 ~ 4655474 (+) True G217969
TU295007 lncRNA upstream 275279 4523594 ~ 4523896 (+) True G217956
TU294993 lncRNA upstream 276469 4522385 ~ 4522706 (+) False trdmt1
TU295068 lncRNA downstream 156826 4956073 ~ 4956401 (+) True G218012
TU295081 lncRNA downstream 403340 5202587 ~ 5202896 (+) True G218023
TU295083 lncRNA downstream 434543 5233790 ~ 5234090 (+) True G218025
TU295084 lncRNA downstream 448048 5247295 ~ 5247686 (+) True G218026
TU295089 lncRNA downstream 622727 5421974 ~ 5422348 (+) True G218031
XM_039789744.1 mRNA upstream 42358 4618641 ~ 4756817 (+) False plppr5b
XM_039789740.1 mRNA upstream 42358 4618646 ~ 4756817 (+) True plppr5b
XM_039789742.1 mRNA upstream 42358 4665575 ~ 4756817 (+) False plppr5b
XM_039789743.1 mRNA upstream 56211 4618639 ~ 4742964 (+) False plppr5b
XM_039789738.1 mRNA upstream 276726 4511713 ~ 4522449 (+) True trdmt1
XM_039789543.1 mRNA downstream 82041 4881288 ~ 4888711 (+) True LOC120551947
XM_039790919.1 mRNA downstream 736400 5535647 ~ 5555611 (+) True LOC120552695
XM_039790206.1 mRNA downstream 951634 5750881 ~ 5817627 (+) True reck
XM_039790046.1 mRNA downstream 1055393 5854640 ~ 5895766 (+) True tgfbr1b
XM_039789959.1 mRNA downstream 1110630 5909877 ~ 5928609 (+) True lancl2
unassigned_transcript_1360 other upstream 380002 4419092 ~ 4419173 (+) True trnas-gcu_27
unassigned_transcript_1359 other upstream 384172 4414922 ~ 4415003 (+) True trnas-gcu_26
unassigned_transcript_1358 other upstream 386544 4412550 ~ 4412631 (+) True trnas-gcu_25
unassigned_transcript_1357 other upstream 388213 4410880 ~ 4410962 (+) True trnas-gcu_24
unassigned_transcript_1353 other upstream 405599 4393504 ~ 4393576 (+) True trnaa-cgc_15
unassigned_transcript_1369 other downstream 5984 4805231 ~ 4805303 (+) True trnaa-agc_25
unassigned_transcript_1371 other downstream 7393 4806640 ~ 4806712 (+) True trnaa-agc_26
unassigned_transcript_1372 other downstream 10677 4809924 ~ 4810007 (+) True trnas-gcu_36
unassigned_transcript_1373 other downstream 13304 4812551 ~ 4812632 (+) True trnas-gcu_37
unassigned_transcript_1374 other downstream 14998 4814245 ~ 4814327 (+) True trnas-gcu_38

Expression Profile