RNA id: unassigned_transcript_1371


Basic Information

Item Value
RNA id unassigned_transcript_1371
length 73
RNA type tRNA
GC content 0.53
exon number 1
gene id trnaa-agc_26
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 4806640 ~ 4806712 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggggaattagctcaaatggtagagcgCTCGCTTAGCATGCGAGAGGTAGTGGGATCGATGCCCACATTCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295015 lncRNA upstream 44390 4759620 ~ 4762250 (+) True G217964
TU295016 lncRNA upstream 44979 4759620 ~ 4761661 (+) False G217964
TU295021 lncRNA upstream 151166 4655265 ~ 4655474 (+) True G217969
TU295007 lncRNA upstream 282744 4523594 ~ 4523896 (+) True G217956
TU294993 lncRNA upstream 283934 4522385 ~ 4522706 (+) False trdmt1
TU295068 lncRNA downstream 149361 4956073 ~ 4956401 (+) True G218012
TU295081 lncRNA downstream 395875 5202587 ~ 5202896 (+) True G218023
TU295083 lncRNA downstream 427078 5233790 ~ 5234090 (+) True G218025
TU295084 lncRNA downstream 440583 5247295 ~ 5247686 (+) True G218026
TU295089 lncRNA downstream 615262 5421974 ~ 5422348 (+) True G218031
XM_039789744.1 mRNA upstream 49823 4618641 ~ 4756817 (+) False plppr5b
XM_039789740.1 mRNA upstream 49823 4618646 ~ 4756817 (+) True plppr5b
XM_039789742.1 mRNA upstream 49823 4665575 ~ 4756817 (+) False plppr5b
XM_039789743.1 mRNA upstream 63676 4618639 ~ 4742964 (+) False plppr5b
XM_039789738.1 mRNA upstream 284191 4511713 ~ 4522449 (+) True trdmt1
XM_039789543.1 mRNA downstream 74576 4881288 ~ 4888711 (+) True LOC120551947
XM_039790919.1 mRNA downstream 728935 5535647 ~ 5555611 (+) True LOC120552695
XM_039790206.1 mRNA downstream 944169 5750881 ~ 5817627 (+) True reck
XM_039790046.1 mRNA downstream 1047928 5854640 ~ 5895766 (+) True tgfbr1b
XM_039789959.1 mRNA downstream 1103165 5909877 ~ 5928609 (+) True lancl2
unassigned_transcript_1369 other upstream 1337 4805231 ~ 4805303 (+) True trnaa-agc_25
unassigned_transcript_1366 other upstream 7393 4799175 ~ 4799247 (+) True trnaa-agc_24
unassigned_transcript_1360 other upstream 387467 4419092 ~ 4419173 (+) True trnas-gcu_27
unassigned_transcript_1359 other upstream 391637 4414922 ~ 4415003 (+) True trnas-gcu_26
unassigned_transcript_1358 other upstream 394009 4412550 ~ 4412631 (+) True trnas-gcu_25
unassigned_transcript_1372 other downstream 3212 4809924 ~ 4810007 (+) True trnas-gcu_36
unassigned_transcript_1373 other downstream 5839 4812551 ~ 4812632 (+) True trnas-gcu_37
unassigned_transcript_1374 other downstream 7533 4814245 ~ 4814327 (+) True trnas-gcu_38
unassigned_transcript_1375 other downstream 16969 4823681 ~ 4823762 (+) True trnas-gcu_39
unassigned_transcript_1377 other downstream 18745 4825457 ~ 4825539 (+) True trnas-gcu_40