RNA id: unassigned_transcript_1396


Basic Information

Item Value
RNA id unassigned_transcript_1396
length 83
RNA type tRNA
GC content 0.57
exon number 1
gene id trnas-gcu_56
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 5578610 ~ 5578692 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACGAGGTGGCCGgagtggttaaggcgatggactGCTAATCCATTGTGCTCTGCACGcatgggttcaaatcccatccTCGtcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295097 lncRNA upstream 87242 5491143 ~ 5491368 (+) True G218039
TU295089 lncRNA upstream 156262 5421974 ~ 5422348 (+) True G218031
TU295084 lncRNA upstream 330924 5247295 ~ 5247686 (+) True G218026
TU295083 lncRNA upstream 344520 5233790 ~ 5234090 (+) True G218025
TU295081 lncRNA upstream 375714 5202587 ~ 5202896 (+) True G218023
TU295129 lncRNA downstream 51019 5629711 ~ 5630218 (+) True G218060
TU295136 lncRNA downstream 144116 5722808 ~ 5725509 (+) True G218067
TU295137 lncRNA downstream 144116 5722808 ~ 5727886 (+) False G218067
TU295138 lncRNA downstream 144116 5722808 ~ 5748244 (+) False G218067
TU295139 lncRNA downstream 144116 5722808 ~ 5757421 (+) False G218067
XM_039790919.1 mRNA upstream 22999 5535647 ~ 5555611 (+) True LOC120552695
XM_039789543.1 mRNA upstream 689899 4881288 ~ 4888711 (+) True LOC120551947
XM_039789744.1 mRNA upstream 821793 4618641 ~ 4756817 (+) False plppr5b
XM_039790206.1 mRNA downstream 172189 5750881 ~ 5817627 (+) True reck
XM_039790046.1 mRNA downstream 275948 5854640 ~ 5895766 (+) True tgfbr1b
XM_039789959.1 mRNA downstream 331185 5909877 ~ 5928609 (+) True lancl2
XM_039789960.1 mRNA downstream 355328 5934020 ~ 5948852 (+) True vopp1
XM_039789958.1 mRNA downstream 701910 6280602 ~ 6454013 (+) False mpp7a
unassigned_transcript_1395 other upstream 2408 5576121 ~ 5576202 (+) True trnas-gcu_55
unassigned_transcript_1394 other upstream 5467 5573062 ~ 5573143 (+) True trnas-gcu_54
unassigned_transcript_1393 other upstream 6477 5572052 ~ 5572133 (+) True trnas-gcu_53
unassigned_transcript_1392 other upstream 8524 5570005 ~ 5570086 (+) True trnas-gcu_52
unassigned_transcript_1388 other upstream 720498 4858027 ~ 4858112 (+) True trnas-acu_1
unassigned_transcript_1397 other downstream 1223 5579915 ~ 5579996 (+) True trnas-gcu_57
unassigned_transcript_1398 other downstream 2354 5581046 ~ 5581127 (+) True trnas-gcu_58
unassigned_transcript_1399 other downstream 3941 5582633 ~ 5582714 (+) True trnas-gcu_59
unassigned_transcript_1400 other downstream 5068 5583760 ~ 5583841 (+) True trnas-gcu_60
unassigned_transcript_1401 other downstream 6432 5585124 ~ 5585203 (+) True trnas-gcu_61