RNA id: unassigned_transcript_1401


Basic Information

Item Value
RNA id unassigned_transcript_1401
length 80
RNA type tRNA
GC content 0.55
exon number 1
gene id trnas-gcu_61
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 5585124 ~ 5585203 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACGaggtggccgagtggttaaggcgatggactGCTAATCCATTGTGCTCTGCGcatgggttcaaatcccatcctcgttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295097 lncRNA upstream 93756 5491143 ~ 5491368 (+) True G218039
TU295089 lncRNA upstream 162776 5421974 ~ 5422348 (+) True G218031
TU295084 lncRNA upstream 337438 5247295 ~ 5247686 (+) True G218026
TU295083 lncRNA upstream 351034 5233790 ~ 5234090 (+) True G218025
TU295081 lncRNA upstream 382228 5202587 ~ 5202896 (+) True G218023
TU295129 lncRNA downstream 44508 5629711 ~ 5630218 (+) True G218060
TU295136 lncRNA downstream 137605 5722808 ~ 5725509 (+) True G218067
TU295137 lncRNA downstream 137605 5722808 ~ 5727886 (+) False G218067
TU295138 lncRNA downstream 137605 5722808 ~ 5748244 (+) False G218067
TU295139 lncRNA downstream 137605 5722808 ~ 5757421 (+) False G218067
XM_039790919.1 mRNA upstream 29513 5535647 ~ 5555611 (+) True LOC120552695
XM_039789543.1 mRNA upstream 696413 4881288 ~ 4888711 (+) True LOC120551947
XM_039789744.1 mRNA upstream 828307 4618641 ~ 4756817 (+) False plppr5b
XM_039790206.1 mRNA downstream 165678 5750881 ~ 5817627 (+) True reck
XM_039790046.1 mRNA downstream 269437 5854640 ~ 5895766 (+) True tgfbr1b
XM_039789959.1 mRNA downstream 324674 5909877 ~ 5928609 (+) True lancl2
XM_039789960.1 mRNA downstream 348817 5934020 ~ 5948852 (+) True vopp1
XM_039789958.1 mRNA downstream 695399 6280602 ~ 6454013 (+) False mpp7a
unassigned_transcript_1400 other upstream 1283 5583760 ~ 5583841 (+) True trnas-gcu_60
unassigned_transcript_1399 other upstream 2410 5582633 ~ 5582714 (+) True trnas-gcu_59
unassigned_transcript_1398 other upstream 3997 5581046 ~ 5581127 (+) True trnas-gcu_58
unassigned_transcript_1397 other upstream 5128 5579915 ~ 5579996 (+) True trnas-gcu_57
unassigned_transcript_1396 other upstream 6432 5578610 ~ 5578692 (+) True trnas-gcu_56
unassigned_transcript_1402 other downstream 693 5585896 ~ 5585977 (+) True trnas-gcu_62
unassigned_transcript_1403 other downstream 2053 5587256 ~ 5587338 (+) True trnas-gcu_63
unassigned_transcript_1404 other downstream 3244 5588447 ~ 5588528 (+) True trnas-gcu_64
unassigned_transcript_1405 other downstream 4604 5589807 ~ 5589891 (+) True trnas-gcu_65
unassigned_transcript_1406 other downstream 5799 5591002 ~ 5591083 (+) True trnas-gcu_66