RNA id: unassigned_transcript_1408


Basic Information

Item Value
RNA id unassigned_transcript_1408
length 72
RNA type tRNA
GC content 0.58
exon number 1
gene id trnaw-cca_31
representative True

Chromosome Information

Item Value
chromosome id NC_053133.1
NCBI id CM020930.1
chromosome length 31697812
location 7289230 ~ 7289301 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACCTCGTGGCGCAACGGTAGCGCGTCTGACTCCAGATCAGAAGGTTGCGTGTTCAAATCACGTCGGGGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU295419 lncRNA upstream 15636 7273351 ~ 7273594 (+) True G218280
TU295418 lncRNA upstream 109522 7179476 ~ 7179708 (+) True G218279
TU295416 lncRNA upstream 147452 7141561 ~ 7141778 (+) True G218277
TU295415 lncRNA upstream 171653 7117345 ~ 7117577 (+) True G218276
TU295414 lncRNA upstream 221639 7067375 ~ 7067591 (+) True G218275
TU295424 lncRNA downstream 55499 7344800 ~ 7346341 (+) True G218283
TU295426 lncRNA downstream 58383 7347684 ~ 7348441 (+) True G218284
TU295440 lncRNA downstream 78210 7367511 ~ 7373341 (+) True LOC120552660
TU295454 lncRNA downstream 125907 7415208 ~ 7464712 (+) True G218299
TU295497 lncRNA downstream 344273 7633574 ~ 7634154 (+) True G218331
XM_039789540.1 mRNA upstream 695200 6567730 ~ 6594030 (+) True mkxa
XM_039789541.1 mRNA upstream 695200 6567736 ~ 6594030 (+) False mkxa
XM_039790868.1 mRNA upstream 739966 6482474 ~ 6549264 (+) True odad2
XM_039790850.1 mRNA downstream 71305 7360606 ~ 7373347 (+) False LOC120552660
XM_039790851.1 mRNA downstream 71305 7360606 ~ 7373347 (+) False LOC120552660
XM_039790855.1 mRNA downstream 71305 7360606 ~ 7373347 (+) False LOC120552660
XM_039790853.1 mRNA downstream 71305 7360606 ~ 7373347 (+) False LOC120552660
XM_039790854.1 mRNA downstream 71305 7360606 ~ 7373347 (+) False LOC120552660
unassigned_transcript_1407 other upstream 7453 7281706 ~ 7281777 (+) True trnaw-cca_30
unassigned_transcript_1406 other upstream 1698147 5591002 ~ 5591083 (+) True trnas-gcu_66
unassigned_transcript_1405 other upstream 1699339 5589807 ~ 5589891 (+) True trnas-gcu_65
unassigned_transcript_1404 other upstream 1700702 5588447 ~ 5588528 (+) True trnas-gcu_64
unassigned_transcript_1403 other upstream 1701892 5587256 ~ 5587338 (+) True trnas-gcu_63
TU295439 other downstream 78210 7367511 ~ 7373341 (+) False LOC120552660
TU295442 other downstream 78210 7367511 ~ 7373341 (+) False LOC120552660
TU295651 other downstream 1260569 8549870 ~ 8581127 (+) False LOC120552265
TU295657 other downstream 1261482 8550783 ~ 8606578 (+) False G218441
TU295664 other downstream 1266915 8556216 ~ 8557253 (+) True G218445