RNA id: TU305889


Basic Information

Item Value
RNA id TU305889
length 736
lncRNA type sense_over
GC content 0.52
exon number 3
gene id G225550
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 3353454 ~ 3362929 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagtgcaagtaatcaggttgttttttttgtcttttgttggctcacttttactcacaacatgctaagcggcaacataggattccattcactacgctaagctaactagcggtgctgccggtgttgcaccggactaaaacgatgcatgcacataaaatgcgttggcccacctatctacagctagaggagacctcacctatctacagctagaggagaccccacctatctacagctagaggagaccccacctatctacagctagaggagaccccacccatCTACACGCCAGGGGAGACCTCacccatctacagctagaggagaccccacctatctacagctaggggagacctcacctatctacagctaggggagacctcacctatctacagctagaggagaccccacctatctacagctaggggagacctcacctatctacagctaggggagaccccacctatctacagctagaggagaccccacctatctacagctagaggagaccccacctatctacagctaggggagaccccacctatctacagctagaggagaccccacctatctacagctaggggagaccccacctatctacagctagaggagacctcacctatctacagctagaggagaccccacctatctacagctaggggagacctcacctatctacagctagaggagacctcacctatctacagctaggggagaccccacctatctacagctaagggagacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305875 lncRNA upstream 644 3352531 ~ 3352810 (+) True G225542
TU305764 lncRNA upstream 45410 3307014 ~ 3308044 (+) True G225489
TU305753 lncRNA upstream 66117 3274728 ~ 3287337 (+) True G225485
TU305888 lncRNA downstream 57554 3420483 ~ 3420957 (+) True G225549
TU305900 lncRNA downstream 115565 3478494 ~ 3546916 (+) True G225561
TU305882 lncRNA downstream 137350 3500279 ~ 3506467 (+) False shank3b
TU305914 lncRNA downstream 206593 3569522 ~ 3627258 (+) True G225570
TU305916 lncRNA downstream 207839 3570768 ~ 3574316 (+) True G225571
XM_039792284.1 mRNA upstream 5468 3328950 ~ 3347986 (+) True cct2
XM_039792285.1 mRNA upstream 5468 3328950 ~ 3347986 (+) False cct2
XM_039792418.1 mRNA upstream 50704 3260679 ~ 3302750 (+) True LOC120553725
XM_039792417.1 mRNA upstream 107251 3176540 ~ 3246203 (+) True LOC120553724
XM_039792104.1 mRNA upstream 235814 3110841 ~ 3117640 (+) False LOC120553565
XM_039792205.1 mRNA downstream 57434 3420363 ~ 3500294 (+) False shank3b
XM_039792204.1 mRNA downstream 57434 3420363 ~ 3500294 (+) True shank3b
XM_039792207.1 mRNA downstream 57434 3420363 ~ 3500294 (+) False shank3b
XM_039792206.1 mRNA downstream 57434 3420363 ~ 3500294 (+) False shank3b
XM_039791203.1 mRNA downstream 183810 3546739 ~ 3567593 (+) True LOC120553119
TU305747 other upstream 107294 3244369 ~ 3246160 (+) False LOC120553724
TU305697 other upstream 222152 3129944 ~ 3131302 (+) True G225445
unassigned_transcript_1464 other upstream 420725 2932657 ~ 2932729 (+) True trnat-ugu_32
unassigned_transcript_1463 other upstream 429259 2924123 ~ 2924195 (+) True trnat-ugu_31
unassigned_transcript_1462 other upstream 430888 2922494 ~ 2922566 (+) True trnat-ugu_30
TU305886 other downstream 132850 3495779 ~ 3500144 (+) False shank3b
unassigned_transcript_1465 other downstream 147151 3510080 ~ 3510152 (+) True trnat-ugu_33
unassigned_transcript_1466 other downstream 154621 3517550 ~ 3517622 (+) True trnat-ugu_34
unassigned_transcript_1467 other downstream 155532 3518461 ~ 3518533 (+) True trnat-ugu_35
unassigned_transcript_1468 other downstream 158503 3521432 ~ 3521505 (+) True trnat-ugu_36

Expression Profile