RNA id: TU305926


Basic Information

Item Value
RNA id TU305926
length 244
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G225580
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 3606829 ~ 3713336 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacagtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305920 lncRNA upstream 30808 3575050 ~ 3576021 (+) True G225575
TU305916 lncRNA upstream 32513 3570768 ~ 3574316 (+) True G225571
TU305900 lncRNA upstream 59913 3478494 ~ 3546916 (+) True G225561
TU305882 lncRNA upstream 100362 3500279 ~ 3506467 (+) False shank3b
TU305888 lncRNA upstream 185872 3420483 ~ 3420957 (+) True G225549
TU305940 lncRNA downstream 34521 3747857 ~ 3801170 (+) True G225592
TU305939 lncRNA downstream 38617 3751953 ~ 3785419 (+) True G225591
TU305945 lncRNA downstream 65921 3779257 ~ 3781402 (+) True G225597
TU305946 lncRNA downstream 75076 3788412 ~ 3792834 (+) True G225598
TU305951 lncRNA downstream 98794 3812130 ~ 3812413 (+) True G225602
XM_039791203.1 mRNA upstream 39236 3546739 ~ 3567593 (+) True LOC120553119
XM_039791204.1 mRNA upstream 39236 3546739 ~ 3567593 (+) False LOC120553119
XM_039792204.1 mRNA upstream 106535 3420363 ~ 3500294 (+) True shank3b
XM_039791231.1 mRNA downstream 23146 3736482 ~ 3800595 (+) True cand1
XM_039791233.1 mRNA downstream 102370 3815706 ~ 3840259 (+) False LOC120553144
XM_039792093.1 mRNA downstream 128660 3841996 ~ 3873319 (+) False mdm1
XM_039792091.1 mRNA downstream 128662 3841998 ~ 3873319 (+) True mdm1
XM_039792092.1 mRNA downstream 128662 3841998 ~ 3873319 (+) False mdm1
unassigned_transcript_1472 other upstream 72157 3534600 ~ 3534672 (+) True trnat-ugu_40
unassigned_transcript_1471 other upstream 73168 3533589 ~ 3533661 (+) True trnat-ugu_39
unassigned_transcript_1470 other upstream 74749 3532008 ~ 3532080 (+) True trnat-ugu_38
unassigned_transcript_1469 other upstream 78268 3528489 ~ 3528561 (+) True trnat-ugu_37
unassigned_transcript_1468 other upstream 85324 3521432 ~ 3521505 (+) True trnat-ugu_36
TU305947 other downstream 119410 3832746 ~ 3841174 (+) True LOC120553144
TU306138 other downstream 222338 3935674 ~ 3938954 (+) False LOC120553793
unassigned_transcript_1473 other downstream 473225 4186561 ~ 4186671 (+) True trnal-caa_13
unassigned_transcript_1474 other downstream 474833 4188169 ~ 4188279 (+) True trnal-caa_14
unassigned_transcript_1475 other downstream 475282 4188618 ~ 4188728 (+) True trnal-caa_15

Expression Profile