RNA id: TU305948


Basic Information

Item Value
RNA id TU305948
length 4760
lncRNA type sense_over
GC content 0.45
exon number 3
gene id LOC120553144
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 3814481 ~ 3841174 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGGGCGTGGCGTTGCAGGTTCCCATGATCCTGGTTGGAAATAAGTGCGACCTGGAGGTGGAGCGTGTGGTGGCCAAAGAGTCGGGCATCGGACTCGCCCGCCAGTGGAACTCCTGCGCCTTCCTGGAGACCTCGGCCAAGAGCAAGATCAACGTTAACGagatcttCTATGACCTTGTGCGTCAGATTAACAGGAAGAGTCCAGTTCAAGGGAAAGCTCGCAAAAAGTCAAACTGTCAACTGCTCTAATAACCGttttCTGCTCACCTGACCgacaaccaaccaaccaaccaaccaaccaaccaaccaaccaaccaaccaaccaaccaaccaatcacAGGACATCTTCCAGCTGGCCACGCCCCTTTAACACACCCACGTCATCATTAACATCAGCCACCTCTGTTCCCGTGACGACCACATCTCCCGTCCCCTCACCACACAGTCCAACAGAAACTGTTGCCTTGGAAACATTAAAACTAAACATCAAAAGACTGCAGcggcgatgatgatgatgacgacgacgacgacgatgGTGAAGATTTTGATTCtgctgttgcagaaatgggggcTGTCCAAACAACTGCCCAAGTTTCAACTACAGTTCCCATCATGCTCTCTGCTATAGGCCATTTTGCGCTGGGGGAGTGGCCAtgtgcttttacttttaaatgtttctttcctttctttcttttgacgTATTTTTCAGCAGTCCCGAGCCATTCACACGCAGTTTGACCTCTTCActgtcagctctgtgtgtgcgACTCTGGTTGAACCTGTGGATCCATACAGTGGTTATTATTATGATTCTGTGTGAAAAGATATAAAAGtcatttaatgtttttgttttggatttTTGGGGGATTAGGGGGGTGCAGCAGCTTATGTGATCAGCTCACCGCGCTCGTAGCTTTGAGCTAACGTACGCTAACTGACAGCTACGGGGGTGAATAGGCCCTTTTTACAGCATGTCAGGGCAGGTGTAATTAATAGCATTAATTATGGCCCTGTTCCATTTAGGTGGGCCAGGACCCTGGTATGAGCTAGCATGCACTGGAATGGCTGTGAGACGCTAAATAGAATGGAACCGTAATTAATTAGATCAATTGTATCGGTGTTTACCCgtgtcaaaatgtaaaaagggCCTATAAGCAATATTCATAGAAAATGATAACTATCCGAAATTTTCGATTTGTTGGGTGACAGCTTTGTTGGCGTATCTTTAAAGAAGTTTATGTAGACAAAGCTTACGCAGCTTTGGGCTACCCtgttagcctagcagctagtaAAAATGCATTAGAAATATTGTTTGTGGGGTGTTAGCATTATTAATACATTCCCAAACAAATTGATGGTAGCTGTTAGCCATGGTCCTGCTAGTCCCAGTTGCAAATGAAATGCATTAGCATTGTTGGGAGAAAATGCTAACTATGCTAACACACGATTTGTCGAGTATTAGCTTTGTTGGCATTTTCTTGAAGAAATGAATGTGAACTTATAGCTTAAGGTAACCTcgttagcctagcagctagtaAACATTGTGGGCAGCAACTGTGTGTTGATTTGTGGTGTTAGCATTATTAAGATATCCCTAAAGAAACTTATGGTAGCTTGGCTATATTCACACAGAAACAAATAGGGGGAGGGATGATTGCTGTGAGTTAGCGTGAGCTAGCTTGTCATTTAGGAAAAGGTAAAACTGCTAAACAGTATTAAATTTGAAAACATCAGCAATGAAACTTGGGCGTTTGGGGGCGCTATAGCAAATATCAAGGAGAGCTAACAATGTTAGCCTGTTAACCCtgttagcctagcagctagtaAAAATGCATTAGAAATATTGTTTGTGGGGTGTTAGCATTATTAATACATTCCCAAACAAATTGATGGTAGCTGTTAGCCATGGTCCTTCTATGGTAGCTTATAGCTTCTATACCATAACTATGGTAACAATGCCACCATGTCAAAGGAACGATAGTAGCTGCGTGCTAACTCGTTAGCGTAGCAGCGCGGTGAGCTGACTCTAGATCTGCTGCTCAGGGCGGACATGTTGCCTTTAGACAGCAGACTCACACTGGTCCAGTACcttctatgtatgtgtgtgtatgtgtgtgtttgtgagtgtgtgtttccgTGTGTTTATGAGTGTATGTGAGCAATGAACCACAAAAGTTTCTGTGATTATCTTTTTGGCccgggggtgggtgggtggggggggggggttatattTACTGAGCAGAGCAGCCAGCAGGTGTTGTTGCTGTATTATTAACCACATTATTACCTGActattaatgttattaacacATCTGAGAGGGGAAGCACTTAATTATCTGTCGAAAGTCCTTTAACTGATGGGAATATACTAAACTATCCAGCTGTGGAGGaccaaaagaaaagacagatcTGGTCCTTCTTATCTTTGCATTCTCAGATCATCGGGTGTAATATTTCATGCTAACACTTTAGCATACTCTCGGTTGAGTGGTAGTAGCTCAAAGCTAACATGCTAAGGTGCTAGCGTGGAGTGCCGCTGACACCTGGGTAGTTTTCAGTATTCTCATCGGTTAAAGAAGAAAGTGTGACTAAAATCTCAGTGTTTCTTTGTAACGGTAGCACGGCTGAGGTTGAGACCGACCGGAGGAGGTTGGGCTTAAAGCTGAAGCCCCGCCCCTTGTGCATTTGGGGGGCGTGgcctgtgaagcagcagccaCAAAAAAAGCCTTTGAATATCTGTCTTTGTTTGAAATGTGAGAGTGGTCATCTTTCAGATACAGTGTGTTGGACCAGAGACCTCTGTGAGTACTGCTGTGCACAGCGATGTACTGTCAGGAGTACTGCGGTGCGTGCAGTGTGGTACTGCTGTCAGTATTCTGGTTCTCCTGCAGTACGTTCAGTCATGTAGCATGTTGATGTTTCTGTCAGTACTCAGTCTGACCTCCAGGAGGTGCTGCGACAGTTTGCATGCCGAGCAGAGGCTTCAAGATGAAAGGTCTGTTTGCAGCCGTGGGGGGGCATTCCTGTCAGCTCCAGCGTTGAGATGCTCGATCCGTACCGGGAACACAATTGTTTCTACTCATGTCGCATGTACGTAGATGGTTGAGATTAGGCAATGACCTAACCTTGAGTGGTTAGTCAGGGTGGTTtcgcattgccagctctatctccacaagtgataacatttgcaccctgcaaaagaagaCGCCATCTACAATAtcaaatgaagttaactgttgacacaatacagtaccgtgagctatttaaatgagctgatacatggttaaacctcattggctcttaccagtgtatctccgtgtgtacttcatccCCAGAAATCCCACAaattggtcccaaaacgtcccagttagagaggaaacgcccTAAACATATTACTTAATAATTTCCCGAAAGAACTGAGCAGggctgccttgttgcaccatccaaatttgcttcaaaacttgacattttcagagtgtagctcgctagctcgatGTTTGATGTTTCCCCGAAGCGAACAGAGTTTAAGAACGGCAACGCACAGAGAGAGCGGAAGGAGCCTGACATCCTGAATCAGGTTCCCGGTACGGATCGGGTCCTGACCGGGTTATCCTAACGCAATATAAATAAAACCGTTGCTTGCTAacacgctagcatgctaacaaatAGGAAAGCCAGTGTTTGCGATAGCCCCTCCCAGATGATTCCCAATAAAAGCTCCCGGGGAAACCCTTTGGCCACACAGTTGAAGTCCCAGTCCCAGTGTCCTTGTGATGCAAACGCCTGTTTTGCTCAACGGCTCGTGGCAACACCTGGATATCCGACACGTGCTCAGCCAATCAAATCAACACCTAGCTGCCGCGGCTGCAGGCAGACCTTTCTGGCTTCCACAGTGACAAAGGCTGTGGTGGCATTTGTCATTTCATGCGACTTCTGGGGCTGCAATGGCTAACGGCTCGGGACAAACTCATATAGTGATGATGTGCTTTGGTCATGGACGTTTAGATGGCAGATCTAAAGGCCTCAGTGTGCTTCCAAAAGAAGTAGGTTGTACGATGTGTTGTCCGTTTTTACACCTGTTTCAGAACGGCACACTTCCGGACAGTCTTTCCTCGAAGACATTCACGACACTGAGCTGTGTGACAAGTTGAACTTCACGCTACTGTGTAAAGCtggattgtcttttttttgtttttaagtcaaAAAATGATCAGAAACTGCCAAGGAAAAGGTTTTAGATGCTGTCAAGACATTCCAAGAAGCACTTAGTTTGAAGCCTTAACGTCCATGATCAATCAAGgcatatttttcacttttttttttatagagctaggctagcagtttccctctgcttccagtctttgtgctaagctaggctaagtGCACACTGGACCTATCTCTGAGATGAAGAGGTTTGTGACCTTCTCTTCTGAGTTTCTGTAAAAAGGCTGAagtatagaatagaatagaagtCGCGCTGAAATGACGAGAGCAACCGCAGCCCAATGCGAACTGAAATGATTCATtcaaaaagaaattattttacatTACTGAAATAAATCTGCTTTGTTTTCCTCTGTATGGCATGATGACCAGTGAAATGTAAAAGAAACCAGTTCAGCCAGCGCGAGTATCAGGTTCAATTCCCATTTCCGTGCTGCTGAATCGTCACGGTTCGGCCGTCGCCGGAGTCTAGAACTGGTATGAAAGATTGGTCTGAACTGGTTTCTTCCAGAACAGAAACCCACCGCAGCGCCgcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305956 lncRNA upstream 3020 3831438 ~ 3832530 (+) True G225607
TU305949 lncRNA upstream 4603 3814481 ~ 3830947 (+) False LOC120553144
TU305951 lncRNA upstream 23137 3812130 ~ 3812413 (+) True G225602
TU305946 lncRNA upstream 42716 3788412 ~ 3792834 (+) True G225598
TU305939 lncRNA upstream 50131 3751953 ~ 3785419 (+) True G225591
TU306118 lncRNA downstream 44539 3885713 ~ 3934899 (+) False G225707
TU306119 lncRNA downstream 44539 3885713 ~ 3934899 (+) False G225707
TU306120 lncRNA downstream 44539 3885713 ~ 3934899 (+) True G225707
TU306125 lncRNA downstream 44539 3885713 ~ 3934899 (+) False G225707
TU306126 lncRNA downstream 44539 3885713 ~ 3934899 (+) False G225707
XM_039791231.1 mRNA upstream 34955 3736482 ~ 3800595 (+) True cand1
XM_039791203.1 mRNA upstream 267957 3546739 ~ 3567593 (+) True LOC120553119
XM_039791204.1 mRNA upstream 267957 3546739 ~ 3567593 (+) False LOC120553119
XM_039792207.1 mRNA upstream 335256 3420363 ~ 3500294 (+) False shank3b
XM_039792093.1 mRNA downstream 822 3841996 ~ 3873319 (+) False mdm1
XM_039792091.1 mRNA downstream 824 3841998 ~ 3873319 (+) True mdm1
XM_039792092.1 mRNA downstream 824 3841998 ~ 3873319 (+) False mdm1
XM_039792094.1 mRNA downstream 824 3841998 ~ 3866400 (+) False mdm1
XM_039792078.1 mRNA downstream 40999 3882173 ~ 3888180 (+) True il22
unassigned_transcript_1472 other upstream 300878 3534600 ~ 3534672 (+) True trnat-ugu_40
unassigned_transcript_1471 other upstream 301889 3533589 ~ 3533661 (+) True trnat-ugu_39
unassigned_transcript_1470 other upstream 303470 3532008 ~ 3532080 (+) True trnat-ugu_38
unassigned_transcript_1469 other upstream 306989 3528489 ~ 3528561 (+) True trnat-ugu_37
unassigned_transcript_1468 other upstream 314045 3521432 ~ 3521505 (+) True trnat-ugu_36
TU306138 other downstream 94500 3935674 ~ 3938954 (+) False LOC120553793
unassigned_transcript_1473 other downstream 345387 4186561 ~ 4186671 (+) True trnal-caa_13
unassigned_transcript_1474 other downstream 346995 4188169 ~ 4188279 (+) True trnal-caa_14
unassigned_transcript_1475 other downstream 347444 4188618 ~ 4188728 (+) True trnal-caa_15
unassigned_transcript_1476 other downstream 349055 4190229 ~ 4190339 (+) True trnal-caa_16

Expression Profile