RNA id: XM_039791233.1


Basic Information

Item Value
RNA id XM_039791233.1
length 4279
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC120553144
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 3814481 ~ 3841174 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCAGCGTCAGGCAGGAGGGAGCGGCTCTGGTGGAGCGACATAGACCGacagtggaggagagagagagagagagagagagagagcgagcagTGGAGCGGACGGGTGGATGATTcagacagacagtcaggaTGCGTGAATACAAACTGGTTGTTTTAGGATCAGGAGGAGTCGGCAAGTCAGCTCTGacTGTCCAGTTTGTTCAGGGAATCTTTGTGGAGATTGTATGTAATGCTTGTGAAGACAGCTTCCGCTCTCAAGTCGAGGTCGATGGACAGCAGTGTATGTTGGAGATCCTGGACACAGCAGGAACAGAGCAGTTCACGGCGATGCGAGATCTGTACATGAAGAACGGTCAGGGCTTCGCTCTGGTTTACTCCATCACGGCTCAGTCGACTTTCAACGACCTGCAGGACCTCCGAGAGCAGATCCTCAGAGTGAAGGACACCGAGGAGGTTCCCATGATCCTGGTTGGAAATAAGTGCGACCTGGAGGTGGAGCGTGTGGTGGCCAAAGAGTCGGGCATCGGACTCGCCCGCCAGTGGAACTCCTGCGCCTTCCTGGAGACCTCGGCCAAGAGCAAGATCAACGTTAACGagatcttCTATGACCTTGTGCGTCAGATTAACAGGAAGAGTCCAGTTCAAGGGAAAGCTCGCAAAAAGTCAAACTGTCAACTGCTCTAATAACCGttttCTGCTCACCTGACCgacaaccaaccaaccaaccaaccaaccaaccaaccaaccaaccaaccaaccaaccaaccaatcacAGGACATCTTCCAGCTGGCCACGCCCCTTTAACACACCCACGTCATCATTAACATCAGCCACCTCTGTTCCCGTGACGACCACATCTCCCGTCCCCTCACCACACAGTCCAACAGAAACTGTTGCCTTGGAAACATTAAAACTAAACATCAAAAGACTGCAGcggcgatgatgatgatgacgacgacgacgacgatgGTGAAGATTTTGATTCtgctgttgcagaaatgggggcTGTCCAAACAACTGCCCAAGTTTCAACTACAGTTCCCATCATGCTCTCTGCTATAGGCCATTTTGCGCTGGGGGAGTGGCCAtgtgcttttacttttaaatgtttctttcctttctttcttttgacgTATTTTTCAGCAGTCCCGAGCCATTCACACGCAGTTTGACCTCTTCActgtcagctctgtgtgtgcgACTCTGGTTGAACCTGTGGATCCATACAGTGGTTATTATTATGATTCTGTGTGAAAAGATATAAAAGtcatttaatgtttttgttttggatttTTGGGGGATTAGGGGGGTGCAGCAGCTTATGTGATCAGCTCACCGCGCTCGTAGCTTTGAGCTAACGTACGCTAACTGACAGCTACGGGGGTGAATAGGCCCTTTTTACAGCATGTCAGGGCAGGTGTAATTAATAGCATTAATTATGGCCCTGTTCCATTTAGGTGGGCCAGGACCCTGGTATGAGCTAGCATGCACTGGAATGGCTGTGAGACGCTAAATAGAATGGAACCGTAATTAATTAGATCAATTGTATCGGTGTTTACCCgtgtcaaaatgtaaaaagggCCTATAAGCAATATTCATAGAAAATGATAACTATCCGAAATTTTCGATTTGTTGGGTGACAGCTTTGTTGGCGTATCTTTAAAGAAGTTTATGTAGACAAAGCTTACGCAGCTTTGGGCTACCCtgttagcctagcagctagtaAAAATGCATTAGAAATATTGTTTGTGGGGTGTTAGCATTATTAATACATTCCCAAACAAATTGATGGTAGCTGTTAGCCATGGTCCTGCTAGTCCCAGTTGCAAATGAAATGCATTAGCATTGTTGGGAGAAAATGCTAACTATGCTAACACACGATTTGTCGAGTATTAGCTTTGTTGGCATTTTCTTGAAGAAATGAATGTGAACTTATAGCTTAAGGTAACCTcgttagcctagcagctagtaAACATTGTGGGCAGCAACTGTGTGTTGATTTGTGGTGTTAGCATTATTAAGATATCCCTAAAGAAACTTATGGTAGCTTGGCTATATTCACACAGAAACAAATAGGGGGAGGGATGATTGCTGTGAGTTAGCGTGAGCTAGCTTGTCATTTAGGAAAAGGTAAAACTGCTAAACAGTATTAAATTTGAAAACATCAGCAATGAAACTTGGGCGTTTGGGGGCGCTATAGCAAATATCAAGGAGAGCTAACAATGTTAGCCTGTTAACCCtgttagcctagcagctagtaAAAATGCATTAGAAATATTGTTTGTGGGGTGTTAGCATTATTAATACATTCCCAAACAAATTGATGGTAGCTGTTAGCCATGGTCCTTCTATGGTAGCTTATAGCTTCTATACCATAACTATGGTAACAATGCCACCATGTCAAAGGAACGATAGTAGCTGCGTGCTAACTCGTTAGCGTAGCAGCGCGGTGAGCTGACTCTAGATCTGCTGCTCAGGGCGGACATGTTGCCTTTAGACAGCAGACTCACACTGGTCCAGTACcttctatgtatgtgtgtgtatgtgtgtgtttgtgagtgtgtgtttccgTGTGTTTATGAGTGTATGTGAGCAATGAACCACAAAAGTTTCTGTGATTATCTTTTTGGCccgggggtgggtgggtggggggggggggttatattTACTGAGCAGAGCAGCCAGCAGGTGTTGTTGCTGTATTATTAACCACATTATTACCTGActattaatgttattaacacATCTGAGAGGGGAAGCACTTAATTATCTGTCGAAAGTCCTTTAACTGATGGGAATATACTAAACTATCCAGCTGTGGAGGaccaaaagaaaagacagatcTGGTCCTTCTTATCTTTGCATTCTCAGATCATCGGGTGTAATATTTCATGCTAACACTTTAGCATACTCTCGGTTGAGTGGTAGTAGCTCAAAGCTAACATGCTAAGGTGCTAGCGTGGAGTGCCGCTGACACCTGGGTAGTTTTCAGTATTCTCATCGGTTAAAGAAGAAAGTGTGACTAAAATCTCAGTGTTTCTTTGTAACGGTAGCACGGCTGAGGTTGAGACCGACCGGAGGAGGTTGGGCTTAAAGCTGAAGCCCCGCCCCTTGTGCATTTGGGGGGCGTGgcctgtgaagcagcagccaCAAAAAAAGCCTTTGAATATCTGTCTTTGTTTGAAATGTGAGAGTGGTCATCTTTCAGATACAGTGTGTTGGACCAGAGACCTCTGTGAGTACTGCTGTGCACAGCGATGTACTGTCAGGAGTACTGCGGTGCGTGCAGTGTGGTACTGCTGTCAGTATTCTGGTTCTCCTGCAGTACGTTCAGTCATGTAGCATGTTGATGTTTCTGTCAGTACTCAGTCTGACCTCCAGGAGGTGCTGCGACAGTTTGCATGCCGAGCAGAGGCTTCAAGATGAAAGGTCTGTTTGCAGCCGTGGGGGGGCATTCCTGTCAGCTCCAGCGTTGAGATGCTCGATCCGTACCGGGAACACAATTGTTTCTACTCATGTCGCATGTACGTAGATGGTTGAGATTAGGCAATGACCTAACCTTGAGTGGTTAGTCAGGGTGGTTtcgcattgccagctctatctccacaagtgataacatttgcaccctgcaaaagaagaCGCCATCTACAATAtcaaatgaagttaactgttgacacaatacagtaccgtgagctatttaaatgagctgatacatggttaaacctcattggctcttaccagtgtatctccgtgtgtacttcatccCCAGAAATCCCACAaattggtcccaaaacgtcccagttagagaggaaacgcccTAAACATATTACTTAATAATTTCCCGAAAGAACTGAGCAGggctgccttgttgcaccatccaaatttgcttcaaaacttgacattttcagagtgtagctcgctagctcgatGTTTGATGTTTCCCCGAAGCGAACAGAGTTTAAGAACGGCAACGCACAGAGAGAGCGGAAGGAGCCTGACATCCTGAATCAGGTTCCCGGTACGGATCGGGTCCTGACCGGGTTATCCTAACGCAATATAAATAAAACCGTTGCTTGCTAacacgctagcatgctaacaaatAGGAAAGCCAGTGTTTGCGATAGCCCCTCCCAGATGATTCCCAATAAAAGCTCCCGGGGAAACCCTTTGGCCACACAGTTGAAGTCCCAGTCCCAGTGTCCTTGTGATGCAAACGCCTGTTTTGCTCAACGGCTCGTGGCAACACCTGGATATCCGACACGTGCTCAGCCAATCAAAT

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305951 lncRNA upstream 3293 3812130 ~ 3812413 (+) True G225602
TU305940 lncRNA upstream 14536 3747857 ~ 3801170 (+) True G225592
TU305946 lncRNA upstream 22872 3788412 ~ 3792834 (+) True G225598
TU305939 lncRNA upstream 30287 3751953 ~ 3785419 (+) True G225591
TU305945 lncRNA upstream 34304 3779257 ~ 3781402 (+) True G225597
TU306118 lncRNA downstream 45454 3885713 ~ 3934899 (+) False G225707
TU306119 lncRNA downstream 45454 3885713 ~ 3934899 (+) False G225707
TU306120 lncRNA downstream 45454 3885713 ~ 3934899 (+) True G225707
TU306125 lncRNA downstream 45454 3885713 ~ 3934899 (+) False G225707
TU306126 lncRNA downstream 45454 3885713 ~ 3934899 (+) False G225707
XM_039791231.1 mRNA upstream 15111 3736482 ~ 3800595 (+) True cand1
XM_039791203.1 mRNA upstream 248113 3546739 ~ 3567593 (+) True LOC120553119
XM_039791204.1 mRNA upstream 248113 3546739 ~ 3567593 (+) False LOC120553119
XM_039792204.1 mRNA upstream 315412 3420363 ~ 3500294 (+) True shank3b
XM_039792093.1 mRNA downstream 1737 3841996 ~ 3873319 (+) False mdm1
XM_039792091.1 mRNA downstream 1739 3841998 ~ 3873319 (+) True mdm1
XM_039792092.1 mRNA downstream 1739 3841998 ~ 3873319 (+) False mdm1
XM_039792094.1 mRNA downstream 1739 3841998 ~ 3866400 (+) False mdm1
XM_039792078.1 mRNA downstream 41914 3882173 ~ 3888180 (+) True il22
unassigned_transcript_1472 other upstream 281034 3534600 ~ 3534672 (+) True trnat-ugu_40
unassigned_transcript_1471 other upstream 282045 3533589 ~ 3533661 (+) True trnat-ugu_39
unassigned_transcript_1470 other upstream 283626 3532008 ~ 3532080 (+) True trnat-ugu_38
unassigned_transcript_1469 other upstream 287145 3528489 ~ 3528561 (+) True trnat-ugu_37
unassigned_transcript_1468 other upstream 294201 3521432 ~ 3521505 (+) True trnat-ugu_36
TU306138 other downstream 95415 3935674 ~ 3938954 (+) False LOC120553793
unassigned_transcript_1473 other downstream 346302 4186561 ~ 4186671 (+) True trnal-caa_13
unassigned_transcript_1474 other downstream 347910 4188169 ~ 4188279 (+) True trnal-caa_14
unassigned_transcript_1475 other downstream 348359 4188618 ~ 4188728 (+) True trnal-caa_15
unassigned_transcript_1476 other downstream 349970 4190229 ~ 4190339 (+) True trnal-caa_16

Expression Profile