RNA id: TU306128


Basic Information

Item Value
RNA id TU306128
length 429
lncRNA type sense_over
GC content 0.50
exon number 3
gene id G225708
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 3886624 ~ 3926965 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cacacacacacagacacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaacacagacacacccacacacacacacacacacacacacacacacacacacacaaagacacacacaaccgCACAAAGAcaacaacccacacacacaacacacacacacatacagacacacctatacacctacacacacacgcatacacacacacacacacacacagacgcacacacacacacacacacacacacacacacacacacacacacacacacacagacgcacacacaaacacacacacacacagacgcacacacaaacacacacacagagacacacacacacacacacagacgcacacacacacacacacacagagacacacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305948 lncRNA upstream 45450 3835550 ~ 3841174 (+) False LOC120553144
TU305956 lncRNA upstream 54094 3831438 ~ 3832530 (+) True G225607
TU305949 lncRNA upstream 55677 3814481 ~ 3830947 (+) False LOC120553144
TU305951 lncRNA upstream 74211 3812130 ~ 3812413 (+) True G225602
TU305946 lncRNA upstream 93790 3788412 ~ 3792834 (+) True G225598
TU306117 lncRNA downstream 7351 3934316 ~ 3934899 (+) False G225707
TU306123 lncRNA downstream 7351 3934316 ~ 3942427 (+) False G225707
TU306127 lncRNA downstream 7351 3934316 ~ 3934899 (+) False G225707
XR_005638208.1 lncRNA downstream 8711 3935676 ~ 3938948 (+) False LOC120553793
XR_005638207.1 lncRNA downstream 9607 3936572 ~ 3938948 (+) True LOC120553793
XM_039792093.1 mRNA upstream 13305 3841996 ~ 3873319 (+) False mdm1
XM_039792091.1 mRNA upstream 13305 3841998 ~ 3873319 (+) True mdm1
XM_039792092.1 mRNA upstream 13305 3841998 ~ 3873319 (+) False mdm1
XM_039792094.1 mRNA upstream 20224 3841998 ~ 3866400 (+) False mdm1
XM_039791233.1 mRNA upstream 46365 3815706 ~ 3840259 (+) False LOC120553144
XM_039791103.1 mRNA downstream 71769 3998734 ~ 4019042 (+) True LOC120553047
XM_039791111.1 mRNA downstream 166695 4093660 ~ 4107645 (+) False LOC120553050
XM_039791110.1 mRNA downstream 166696 4093661 ~ 4107645 (+) True LOC120553050
XM_039791112.1 mRNA downstream 166696 4093661 ~ 4106590 (+) False LOC120553050
XM_039791116.1 mRNA downstream 228330 4155295 ~ 4175824 (+) True LOC120553052
TU305947 other upstream 45450 3832746 ~ 3841174 (+) True LOC120553144
unassigned_transcript_1472 other upstream 351952 3534600 ~ 3534672 (+) True trnat-ugu_40
unassigned_transcript_1471 other upstream 352963 3533589 ~ 3533661 (+) True trnat-ugu_39
unassigned_transcript_1470 other upstream 354544 3532008 ~ 3532080 (+) True trnat-ugu_38
unassigned_transcript_1469 other upstream 358063 3528489 ~ 3528561 (+) True trnat-ugu_37
TU306138 other downstream 8709 3935674 ~ 3938954 (+) False LOC120553793
unassigned_transcript_1473 other downstream 259596 4186561 ~ 4186671 (+) True trnal-caa_13
unassigned_transcript_1474 other downstream 261204 4188169 ~ 4188279 (+) True trnal-caa_14
unassigned_transcript_1475 other downstream 261653 4188618 ~ 4188728 (+) True trnal-caa_15
unassigned_transcript_1476 other downstream 263264 4190229 ~ 4190339 (+) True trnal-caa_16

Expression Profile