RNA id: XR_005638207.1


Basic Information

Item Value
RNA id XR_005638207.1
length 1646
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id LOC120553793
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 3935674 ~ 3938954 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

accATTGGCAATGTCCGTACGTTACTAACGGTCGgtggattagctaacgttagtaacGTTTTATTCATAAACCGCTCCTTAAACCGAGCTAAATCAACGTTAGCTACGTTTTAGTGTTCCAACATTTGTCATGGCattatagctagctagctagcaagccaATGTAGCATACGATGACTCAGATAAGCTAGCCAGCTGCTAGCTATCTTATGAAGTGTGACATTAAGCTTAATTAACGTTATTTCAAAGGAGTCGTTAATGGAGACATTTCAAGGCTGTGTCGTTGTTATCTTTTATGTCTGTTTGCACATTCAAATTTACGTTGTCTatcggttttattttttattaagatATATCTGAGTCATTGTATGCTAGCTAAATTGGCTTGCTAGCTAGCTCGGTTTAAGGAGCGGTTTATGAATAAAACgttactaacgttagctaatccacCGACCGTTAGTAACGTACAGACATTGCCAATggtaaattagtttgggatatTTTAATTTAGAAGTCTAAAAATGGGcggcaacattttttttttcacggcAACTGTAACCGTCCTCAGCCTACGTTATGAATGACCATGACTGTTAAAAGACGAACACTGCCATCTTGCTTGCTGAATTGTGAACATGCAGAAAAAGGAGGGAAATAGAGGGAAATTTGTATTCCGCTATCATGTAGCCTATTTTGAATGCTCATGcttgcatgtgttttgtgttatgtATAAAGTACTTTATGTAGTTccttttaaatacaaaatgcaAATTGTAATGCTGACGAAGACAGGCGAACACATCGCCGGTTCCCGCCAATAGGTTCATTTTAGTTAGTGAACTACCTGGCAAAGAAGTCTTGCATCAATCTAATCTGTTGGGACCAACGTGCTAAATTTCACCTGCATGAGCTATTGTCACAGAGTACTTTGCCTCCATGCAGCTGAATTCCACTAATATAGAAATTGGCTGAttctaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgcctgccAAAATAACTATTCTTGATTATTCATTATAAGTTATTAGCTGTAAAATGTTGTTGTTGGCGTGATGAGAATGACCACTTGCTTGcttgacatttctgaatgctTATTGAACAGAAAGCTGACTGAGAACTGGAGCCTTACAACAGAGAAAATCCTCTCTATCGCCCCAAAAGAGAAGACGGGTGACCTTCTGAACAATCTTGAAGATTTCTCAGCAGACAGACGAGGAGACATCGCTTTGCTTCTGCTACCTGTggtgatccccccccccccggcacCTACAAAATCCGGAGAAAGATGGTCCGCCCCAGCTACGCCGAATCTACAAAAGCTTTCGTAGATGAGCAGCCTgTTGGAACAAACATCGCTGAATACCTTACGAAAAGGACAAGCACAGAGGTCCCACATGTGCTTCTTCTTGAGGACAGGCATCAGTTTTCACAAGCCTTTGTTATAGTGCATGGACATGCCTTGGAGCACCCATCTCTTCTTGGGGCAGTAGATGCCTGCTTTAaggctttttatgtttttgatgtACAGTATCCTAGATCTTGTGCACAAGTGTGGGAGTTTTTGCAGACGATATATGGTATCCCTGGACATGTTAGATCATCAGTACAGATGATGCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306125 lncRNA upstream 1673 3885713 ~ 3934899 (+) False G225707
TU306149 lncRNA downstream 58017 3996965 ~ 4051123 (+) True G225721
TU306160 lncRNA downstream 102457 4041405 ~ 4041726 (+) True G225725
TU306161 lncRNA downstream 102457 4041405 ~ 4041726 (+) False G225725
TU306247 lncRNA downstream 199580 4138528 ~ 4140277 (+) True G225785
TU306253 lncRNA downstream 225481 4164429 ~ 4165021 (+) True G225790
XM_039792078.1 mRNA upstream 48392 3882173 ~ 3888180 (+) True il22
XM_039792093.1 mRNA upstream 63253 3841996 ~ 3873319 (+) False mdm1
XM_039791103.1 mRNA downstream 59786 3998734 ~ 4019042 (+) True LOC120553047
XM_039791111.1 mRNA downstream 154712 4093660 ~ 4107645 (+) False LOC120553050
XM_039791110.1 mRNA downstream 154713 4093661 ~ 4107645 (+) True LOC120553050
XM_039791112.1 mRNA downstream 154713 4093661 ~ 4106590 (+) False LOC120553050
XM_039791116.1 mRNA downstream 216347 4155295 ~ 4175824 (+) True LOC120553052
TU305947 other upstream 95398 3832746 ~ 3841174 (+) True LOC120553144
unassigned_transcript_1472 other upstream 401900 3534600 ~ 3534672 (+) True trnat-ugu_40
unassigned_transcript_1471 other upstream 402911 3533589 ~ 3533661 (+) True trnat-ugu_39
unassigned_transcript_1470 other upstream 404492 3532008 ~ 3532080 (+) True trnat-ugu_38
unassigned_transcript_1469 other upstream 408011 3528489 ~ 3528561 (+) True trnat-ugu_37
unassigned_transcript_1473 other downstream 247613 4186561 ~ 4186671 (+) True trnal-caa_13
unassigned_transcript_1474 other downstream 249221 4188169 ~ 4188279 (+) True trnal-caa_14
unassigned_transcript_1475 other downstream 249670 4188618 ~ 4188728 (+) True trnal-caa_15
unassigned_transcript_1476 other downstream 251281 4190229 ~ 4190339 (+) True trnal-caa_16
unassigned_transcript_1477 other downstream 251728 4190676 ~ 4190786 (+) True trnal-caa_17

Expression Profile