RNA id: TU306265


Basic Information

Item Value
RNA id TU306265
length 3373
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G225802
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 4450060 ~ 4453432 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttccGGGTTTAAGTGCCGTTTAAGTTGCTGAAGTATAAATGAATCCTTTATCTTCTATGCTACAAAATCATGGTCTCCATAGAATTATTAAATATCTGCTTTATTCTTTGTCTTCTGAGCCCAGACGATGTTATATAGCGCTTGAGTTAATTGAAATATGCAGTTTGTATGTTGGATGATGAAACCCCTCGCCTTCTGGGAAACACTGACGTCTGAAGTTGGATTTTTTGATTATTAACAAACTGCATCTTTGACTTCTGAAGCAATACGACCTTAAGGCTGGTGCCGTAATCTTTGTACTCATGTCTCAAACTCCGTACGAATTTACGCAACTCTGGCACTACATAACCTCCagatacaaagacacacatcttagcttttttttactttcttaggGGCATTTCACACTCAGAAATTGGTTTCTGAAAGCTACTTTGGTGCCAAATAACTTCAAGAAAATATCTTGTGTTGTTGTAGCGTGTGTAATTTCCAAGGCTTGGACTGTGGTTTGAGTTGTATGTTTGATGAGTGTAGCCAGAAATAAGGGGAACAAACTATTTTGCATGAAATAATCTGGTGGTACGTGCATTTGAAATGGAAAATgtgaaacatatttttttaggTTGTTTTCGGTGCCGGAAGAAGATTCCACCAGCTCCTCAGAGCCACATCTATGGTTTAGATCTTTAATTCCGTCTGACATATAATAGCTCAATCTctattttttagattattttgtgggctttttctgcctttattttgacaggacagctaggtgagaaaggggagagagcgagggggatgacatgcaggaaattgtcacaggtcggactcgaaacctggacctctgcgtcaaggcataaacctctcagtatatgtgcgcctaatctacccactgagccaacccggccacatagCTCAATCTCTTCTCACTCTGCAAATATAGTATATTCATTGTAAAATATGAGACATCTGGTTTATGTGGAAAACatgtctcttaaaaaaaaactattcgtCGACCAACACTAGCTTCTTTTTGCCACCGGAGAGTGCCTTAAAGAGTCAAACTGAAAGTACGTTTTGGAAGTAAAAGCAAACAAATTTAGACTAGTCATTTTATCGTTGTCAACCAAAAAACATTCAATAAGTTTCAACTTTAGTGTCAGgcatatatatagatatattttatttgatcaGTAACAGATAAATAAACCATTAACAATTTGTGTTACAGATGCTAACGGAACAGAGGCTAGCTAGGAAGCAGGCTAGCTAGCAAGACATTTCGCTAGCCAAATGTAAAACCCAAAAATGGTGGCTAATGTCTGCCTTGCTTACCGATGGCTCTGCAGCAGTTCATGTTGCCATGCACTTTGTCATTTCATGCAGACGATTATTTAACTATTTAGCAAATGACACGCtcacaaataacaaaaaaatagatgcaaaagaaaatatagaCTGATGCTTTTCCCTGGCAAGAAATTTAGAAACTGGTCTAATTATCTTTTTTGGGGAAAATGTTTAGATTTTCACAGAAATAGTTGTAAACATTCTGAAACATTTAATTCATGAACTATTGACTTGCAGCATATTGGATTGTTAATCATTGCAGGGttttcccccccccaaaaaagttgTAAGGCCCGGTGGCGTCGctcacagactgatggcagcgtTAATGTGGAGCCCCGCGTGAGGACAGAATCATGGACGCAATCGCGAAATTGGGAATTCAACCCTTGCGTTgcaaaagttgcatggtcgatggTCATGGCTTTCTgggtcaaaaaaattaaaatggaaacttttttttcaaggttttggTCGTCTTCttcgacacttttgtcgctttccccgatgtttttgaagcttttttcaaCGCTATTTTATCAACGATTTTCTTCAAATATTAtaaaattttaataaaacacccacaatcaataaaagtagtgaactgatcatttatttcacttgtaaagagcgttgtatgaaaccatccatgttatttctttttgacaatttggttgaaagaaaacccaaatttctgatatagaaacgttTGAAAaggggtcagatttgacccgaggacaagaGGAGGGTTAAAAATTCCGTAGGGCTCTACAtcaagtcagtgctaaaagatAACTGGagctttgaaaaaaatgacCAGGTCTACGTTTCCAACTGAGCTGCCCCACTTTaactagtttaaaaaaatgtcaggcTTGGTGGGGGGGGACCCTGCATTGGTGCTGGAGAAGCACAAATCCTTTAAGAAGTTTtggtttaaaggtgccctgccatacaaaaccgtttttacttgtatttttttaagtatgtcaggtccatatgtgtttgtgttatgtgttgaatgtgaaaatgaactgctaactcctctgtcagctctagccactggacagaaataagcagagaaatcagaccaatcacaaaagctggtcagtctgacatcatattgcctgagctcattactattcatgagctcgcccagttgggcagGGTAatggatgctgatagccagctctcattggctagctgttagccaatcagagtcaagcagcttagctcattgaatattaatgagaactggcacaaatcgagctgagtcttcctgcaggctttctataccacgctagaatggcttgaaacaaggtaaccaaggcatttttttccacaaaaaatgttacagagtccatggtaggacttcagacatcaccccaaagtaatgaaatacgtgtggcagggcacctttaactaaCACCCAGCTATGTTATCTGTATATCCCCAATGCTCCGGAACCGTTTGGTAAACATGAGAAGGATGTGGCTTGCATATGTGATGTTTAGTTCAGTGTTTTTTCCACGGCACAGAGGTAAAGGCAAATGTTGATGTGTAATGACCGGATGAGGGATCAGCACAGGGAACTGAGCCTTCACTGTAAGTAGATTTATTCGTCCGCTACTTGAGgatctgtgtgttttaacgATGTAAAAGTGAAGCGTGTTGTTTCATGAGGCACAAAGTAAACAAAAAGTGTATTGAGAGGTTTTGAATGTTAAACAGAAAATGGGCCCACTGGTACTGATGTTGTGACTGGCATCGTAAGGGTTACATGTGTTTATACCATTGTATAACAGTTTGTACATCGAATACAACTTTCCCATTGTTTATTCTTGTAACATCATTGTAGGAAATAAAATGGTTTTGGATGGACTGGACCAAGTGTAGACTTTTGAAAACCGAAACAGCAGAACCAGGAACCCAACTGGTCTTGGAGCCCAAATCGGTGACTGAGGAAGTGGAGAAGTGGGCAGAAAAATCCATATCTAGAAAGTCCAAATATCCAATAAAA

Function

GO:

id name namespace
GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer molecular_function

KEGG:

id description
ko00640 Propanoate metabolism
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306270 lncRNA upstream 140672 4309107 ~ 4309388 (+) True G225807
TU306268 lncRNA upstream 178824 4270793 ~ 4271236 (+) True G225805
TU306267 lncRNA upstream 237748 4212078 ~ 4212312 (+) True G225804
TU306253 lncRNA upstream 285039 4164429 ~ 4165021 (+) True G225790
TU306247 lncRNA upstream 309783 4138528 ~ 4140277 (+) True G225785
TU306315 lncRNA downstream 20179 4473611 ~ 4475015 (+) True G225842
TU306316 lncRNA downstream 20179 4473611 ~ 4475127 (+) False G225842
TU306323 lncRNA downstream 36248 4489680 ~ 4490070 (+) True G225847
TU306387 lncRNA downstream 199535 4652967 ~ 4653360 (+) True G225891
TU306388 lncRNA downstream 203063 4656495 ~ 4656819 (+) True G225892
XM_039792062.1 mRNA upstream 2023 4200672 ~ 4448037 (+) False LOC120553538
XM_039792061.1 mRNA upstream 2023 4200818 ~ 4448037 (+) True LOC120553538
XM_039792060.1 mRNA upstream 2023 4200818 ~ 4448037 (+) False LOC120553538
XM_039792065.1 mRNA upstream 2023 4200818 ~ 4448037 (+) False LOC120553538
XM_039792064.1 mRNA upstream 2023 4200818 ~ 4448037 (+) False LOC120553538
XM_039792070.1 mRNA downstream 30029 4483461 ~ 4492887 (+) True slc35e3
XM_039791692.1 mRNA downstream 42458 4495890 ~ 4522614 (+) False upf2
XM_039791693.1 mRNA downstream 42458 4495890 ~ 4522614 (+) False upf2
XM_039791694.1 mRNA downstream 42458 4495890 ~ 4522614 (+) False upf2
XM_039791695.1 mRNA downstream 42458 4495890 ~ 4520354 (+) True upf2
unassigned_transcript_1479 other upstream 253245 4196705 ~ 4196815 (+) True trnal-caa_19
unassigned_transcript_1478 other upstream 256148 4193802 ~ 4193912 (+) True trnal-caa_18
unassigned_transcript_1477 other upstream 259274 4190676 ~ 4190786 (+) True trnal-caa_17
unassigned_transcript_1476 other upstream 259721 4190229 ~ 4190339 (+) True trnal-caa_16
unassigned_transcript_1475 other upstream 261332 4188618 ~ 4188728 (+) True trnal-caa_15
TU306390 other downstream 204012 4657444 ~ 4657969 (+) True G225894
XR_005638175.1 other downstream 830327 5283759 ~ 5373203 (+) False abcc9
XR_005638176.1 other downstream 830327 5283759 ~ 5373203 (+) False abcc9
XR_005638177.1 other downstream 830327 5283759 ~ 5373203 (+) False abcc9
unassigned_transcript_1480 other downstream 2693837 7147269 ~ 7147340 (+) True trnaw-cca_35

Expression Profile