RNA id: TU306270


Basic Information

Item Value
RNA id TU306270
length 282
lncRNA type intronic
GC content 0.41
exon number 1
gene id G225807
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 4309107 ~ 4309388 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGAAAAGGAGTAATGGGAGAAAGGACGGACAGTGATAGAAGGAAGAGAACGGAGGAAGGAAGAATGAAAGGAAGGGATGATGGAAGGAAGAAAATTATGAAGGAAAGGACTCGGAGGAAGAAAAGGGTCTTGGACTCAAATGAAAAATGGAATATGGAGGGACACTACAAGAAAACCAGAAACGATGGAGTTTAAAAAGTTTCAAAGCCATTGAAGAAAGCCAATAAGGATGAAAGCAGcggaaaggaagaaaaagaaacggcagaaaagaacaaaaacggA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306268 lncRNA upstream 37871 4270793 ~ 4271236 (+) True G225805
TU306267 lncRNA upstream 96795 4212078 ~ 4212312 (+) True G225804
TU306253 lncRNA upstream 144086 4164429 ~ 4165021 (+) True G225790
TU306247 lncRNA upstream 168830 4138528 ~ 4140277 (+) True G225785
TU306160 lncRNA upstream 267381 4041405 ~ 4041726 (+) True G225725
TU306265 lncRNA downstream 140672 4450060 ~ 4453432 (+) True G225802
TU306315 lncRNA downstream 164223 4473611 ~ 4475015 (+) True G225842
TU306316 lncRNA downstream 164223 4473611 ~ 4475127 (+) False G225842
TU306323 lncRNA downstream 180292 4489680 ~ 4490070 (+) True G225847
TU306387 lncRNA downstream 343579 4652967 ~ 4653360 (+) True G225891
XM_039791116.1 mRNA upstream 133283 4155295 ~ 4175824 (+) True LOC120553052
XM_039791111.1 mRNA upstream 201462 4093660 ~ 4107645 (+) False LOC120553050
XM_039791110.1 mRNA upstream 201462 4093661 ~ 4107645 (+) True LOC120553050
XM_039791112.1 mRNA upstream 202517 4093661 ~ 4106590 (+) False LOC120553050
XM_039791103.1 mRNA upstream 290065 3998734 ~ 4019042 (+) True LOC120553047
XM_039792070.1 mRNA downstream 174073 4483461 ~ 4492887 (+) True slc35e3
XM_039791692.1 mRNA downstream 186502 4495890 ~ 4522614 (+) False upf2
XM_039791693.1 mRNA downstream 186502 4495890 ~ 4522614 (+) False upf2
XM_039791694.1 mRNA downstream 186502 4495890 ~ 4522614 (+) False upf2
XM_039791695.1 mRNA downstream 186502 4495890 ~ 4520354 (+) True upf2
unassigned_transcript_1479 other upstream 112292 4196705 ~ 4196815 (+) True trnal-caa_19
unassigned_transcript_1478 other upstream 115195 4193802 ~ 4193912 (+) True trnal-caa_18
unassigned_transcript_1477 other upstream 118321 4190676 ~ 4190786 (+) True trnal-caa_17
unassigned_transcript_1476 other upstream 118768 4190229 ~ 4190339 (+) True trnal-caa_16
unassigned_transcript_1475 other upstream 120379 4188618 ~ 4188728 (+) True trnal-caa_15
TU306390 other downstream 348056 4657444 ~ 4657969 (+) True G225894
XR_005638175.1 other downstream 974371 5283759 ~ 5373203 (+) False abcc9
XR_005638176.1 other downstream 974371 5283759 ~ 5373203 (+) False abcc9
XR_005638177.1 other downstream 974371 5283759 ~ 5373203 (+) False abcc9
unassigned_transcript_1480 other downstream 2837881 7147269 ~ 7147340 (+) True trnaw-cca_35

Expression Profile