RNA id: TU306388


Basic Information

Item Value
RNA id TU306388
length 325
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G225892
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 4656495 ~ 4656819 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctctctctctccagtctctctctatgtctctccaccatataacgctctctctcttcagtctctctctatgtctctccaccatataacgctctctctcttcagtctctctctatctctctccaccatataacgctctctctcttcagtctctctctatctctctccaccatataacgctctctctctctccagtctctctctatctcgctccaccatataacgctctctctctccagtctctctctatctgctccaccatataacgccaccatgctttcgggcagttgttgagctCCTCcgatgaggattttaaaatgaatgcgct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306387 lncRNA upstream 3135 4652967 ~ 4653360 (+) True G225891
TU306323 lncRNA upstream 166425 4489680 ~ 4490070 (+) True G225847
TU306316 lncRNA upstream 181368 4473611 ~ 4475127 (+) False G225842
TU306315 lncRNA upstream 181480 4473611 ~ 4475015 (+) True G225842
TU306265 lncRNA upstream 203063 4450060 ~ 4453432 (+) True G225802
TU306391 lncRNA downstream 1365 4658184 ~ 4658631 (+) True G225895
TU306397 lncRNA downstream 52044 4708863 ~ 4709269 (+) True G225901
TU306440 lncRNA downstream 80516 4737335 ~ 4738306 (+) True G225935
TU306448 lncRNA downstream 98188 4755007 ~ 4758772 (+) True G225942
TU306449 lncRNA downstream 106181 4763000 ~ 4763729 (+) True G225943
XM_039791696.1 mRNA upstream 62353 4590710 ~ 4594142 (+) True kics2
XM_039792157.1 mRNA upstream 93223 4543174 ~ 4563272 (+) False LOC120553579
XM_039791702.1 mRNA downstream 32108 4688927 ~ 4696183 (+) True LOC120553359
XM_039792032.1 mRNA downstream 77443 4734262 ~ 4749242 (+) True dmtf1
XM_039791119.1 mRNA downstream 136468 4793287 ~ 4804242 (+) True LOC120553055
XM_039791066.1 mRNA downstream 578331 5235150 ~ 5238344 (+) True LOC120553019
XM_039791065.1 mRNA downstream 579779 5236598 ~ 5238344 (+) False LOC120553019
unassigned_transcript_1479 other upstream 459680 4196705 ~ 4196815 (+) True trnal-caa_19
unassigned_transcript_1478 other upstream 462583 4193802 ~ 4193912 (+) True trnal-caa_18
unassigned_transcript_1477 other upstream 465709 4190676 ~ 4190786 (+) True trnal-caa_17
unassigned_transcript_1476 other upstream 466156 4190229 ~ 4190339 (+) True trnal-caa_16
unassigned_transcript_1475 other upstream 467767 4188618 ~ 4188728 (+) True trnal-caa_15
TU306390 other downstream 625 4657444 ~ 4657969 (+) True G225894
XR_005638175.1 other downstream 626940 5283759 ~ 5373203 (+) False abcc9
XR_005638176.1 other downstream 626940 5283759 ~ 5373203 (+) False abcc9
XR_005638177.1 other downstream 626940 5283759 ~ 5373203 (+) False abcc9
unassigned_transcript_1480 other downstream 2490450 7147269 ~ 7147340 (+) True trnaw-cca_35

Expression Profile