RNA id: TU306397


Basic Information

Item Value
RNA id TU306397
length 407
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G225901
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 4708863 ~ 4709269 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCTTAGGTTGCTGTGTATGCTCTGTCAGTTTGGGTAAAGTTAGCCATGTTTGCCCAATTTTACCGCGTCGTCTGGCTGCTTTCGTGTTGGGTAATCCTCTCAGAAAGATGCCGGAGGTCCTGAAAGCCTTTTCTGTTACAACCCCAATCCGAAGAAAACACATGGGAACAACATAAAACCGTCTTCTCCGACATGCTAAAGTTAGCAGTTAGCCCTTTTTGCTCCTGGATAACCCTACACGTTTTTATACCAGAGATTTGGTTTATAACAATATCCCGCCACTGGTGGGCACCGAGAAGTTTATTCTCAAGCTTTTCTTCTAAAGACAGACTTTTAAATGTCTTCTGTGGAAGATAATCCATGGTTAGCTACATGGTAACCGCACAGATATGATCTTctgttaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306391 lncRNA upstream 50232 4658184 ~ 4658631 (+) True G225895
TU306388 lncRNA upstream 52044 4656495 ~ 4656819 (+) True G225892
TU306387 lncRNA upstream 55503 4652967 ~ 4653360 (+) True G225891
TU306323 lncRNA upstream 218793 4489680 ~ 4490070 (+) True G225847
TU306316 lncRNA upstream 233736 4473611 ~ 4475127 (+) False G225842
TU306440 lncRNA downstream 28066 4737335 ~ 4738306 (+) True G225935
TU306448 lncRNA downstream 45738 4755007 ~ 4758772 (+) True G225942
TU306449 lncRNA downstream 53731 4763000 ~ 4763729 (+) True G225943
TU306466 lncRNA downstream 154589 4863858 ~ 4868807 (+) True G225955
TU306484 lncRNA downstream 370210 5079479 ~ 5163773 (+) True G225973
XM_039791702.1 mRNA upstream 12680 4688927 ~ 4696183 (+) True LOC120553359
XM_039791696.1 mRNA upstream 114721 4590710 ~ 4594142 (+) True kics2
XM_039792157.1 mRNA upstream 145591 4543174 ~ 4563272 (+) False LOC120553579
XM_039792032.1 mRNA downstream 24993 4734262 ~ 4749242 (+) True dmtf1
XM_039791119.1 mRNA downstream 84018 4793287 ~ 4804242 (+) True LOC120553055
XM_039791066.1 mRNA downstream 525881 5235150 ~ 5238344 (+) True LOC120553019
XM_039791065.1 mRNA downstream 527329 5236598 ~ 5238344 (+) False LOC120553019
XM_039792019.1 mRNA downstream 571989 5281258 ~ 5373637 (+) True abcc9
TU306390 other upstream 50894 4657444 ~ 4657969 (+) True G225894
unassigned_transcript_1479 other upstream 512048 4196705 ~ 4196815 (+) True trnal-caa_19
unassigned_transcript_1478 other upstream 514951 4193802 ~ 4193912 (+) True trnal-caa_18
unassigned_transcript_1477 other upstream 518077 4190676 ~ 4190786 (+) True trnal-caa_17
unassigned_transcript_1476 other upstream 518524 4190229 ~ 4190339 (+) True trnal-caa_16
XR_005638175.1 other downstream 574490 5283759 ~ 5373203 (+) False abcc9
XR_005638176.1 other downstream 574490 5283759 ~ 5373203 (+) False abcc9
XR_005638177.1 other downstream 574490 5283759 ~ 5373203 (+) False abcc9
unassigned_transcript_1480 other downstream 2438000 7147269 ~ 7147340 (+) True trnaw-cca_35
TU307013 other downstream 2609271 7318540 ~ 7321049 (+) False snrpf

Expression Profile