RNA id: TU306448


Basic Information

Item Value
RNA id TU306448
length 3766
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G225942
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 4755007 ~ 4758772 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCAGTGTCTCATACTTatacatttaaagaaaaagcaTGATTTCGATTTAGTGTTTGACTTATTTAACAATTAAATATCTCGTACTtatcaagtattttttttttttattgttgtcatACATAACTTCTCATACAGACCAGAGACCAAGCACACAACAGCCAAACCAGGatttaaaaataatcaaatttaAGTTAAGAGCGGATCATCAACACAACCGATGCATTGCAatctttcagttttttttttttaattttaatgtaacGTTAACTTTGAGAACCAGTTTACTGACAGTTTACTTCAGGTCCACTAGGATTCAGGAAGTGGATCACTGACACTGTGGTGGTTTACAGTgtaataaaacatgtaaaagaataaaaaaaaaaaacatgtacagcATGAGGTCTGGTGTTTCAGGTGTGACTGAAGCCTGCAGTCATGACAGTTACAACATGGCACAGAGGATTTTGTTATGAAGCGACATTTAATATCAAACGGTACAAAAGTAGAAAAAGAGTAGAAgatatttggcaaaaaaaaaaaaaaaaagtttgaatgaGGAGAAAAAAGTGCAGAAGGCCGCGGGACGAGTTCACCGACCTCGGTGTTAAAACTAGCATCGCACCTGCTGTTTAGTCATCGGAGCTGCTCTGAACCTGATACACATCTGTGTACATATACGGGATataaatacatactgtgtacagatacagtatgagCTGAGGGTTCAGCTGTCTCACCTCACAGATGGCGGTCACAGGTTTGATTCCCAGTCATCAGGTGGTTTAAACCGGTGGTTTCCTATCCTTTTCGGCTACATATAAGCATAATGTCAAAGAAACATTCTGAGATTAATAGGCCAAAAAGTATTTATACAACATGAAACACGCTTATATTAATGGATTTAATAACTCTCTGTCTCAATCTTCTATTTGGGGGATAATCGTGATctaatgctgcattcatgtgctgTTGGAATAACCGTAACATTTGTTCCCGTACTCGGAAAATTCATGTGAATGCCCTCCTCAATTTGAAAAACAACTCGGTAAGtggactagtctcgcattgccagccctatctccacagtgctgtggagtaaggtctggctacaccacagatgcattctgggattggaggcatgatgtctctctctcatgggtgggccaaattctctgtgcgggcaaaacagagaaaggggaggtaaccttgctccttatgacctcataaggagaagattcctgattggcccatctgagctttcattttctcaaatgcagagcaggatacccagggctcggtttacacctatcaccatgtctagccactgggggaccataggcaggctgggggaactcatattaatgttaaaaaaaactcaatctcagtcttgggtggcactaagctccagacgcaaaatagtctcgggaaggaacttgttttggtggaacatttgcaccccgcaaaaaaaacaatatgaaatgaaggttactgttcacacaatacggTAACGTGAGATGCTTGAGTGCatcgctgtgtgtacttcgtccgaagcaatcccaccaatcggtcccaagttagagaggaaatgcagtAAACATagtctttgtaaatctttaccataattccctgaaagaaccattttcagtgtgtagcttgctagcttgaagtttgttgttgtttcccgaagtgAATGGAGATTGAAAatggcagcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagagagcggaagctGAGGGGCATGCGGCGTgtgatgtcaggcaattatcctggaaatgtacttccgttgatccagactaagtGGGCGAACATTATGTTACACAACGTGGACAGAAGTAAATGTTGGGTTTATGGTAAAAACGTATTAATTCACGTATTGCATACACATTTTTTGCCCACATTTAATATGGTATCAGCTTGTAACTGTTAGTTGCTGTCCACGTAGATTGACCTAGCCTAGAAATGTAGAcccaccctagcggcagcaaatgtaatttacagccagggtcgtctagcagCTCTCCGTTTAGCTTGCgagctgaaaaaaacaaactctagtcaggccaatcacatcgtgtacagagtcggtgggcgggcttaacataatgatggcagagttgcgacggttccgcgtgaattccctgctacttgaaaacaaagaagatggctgctgctgctggagaacagcggtcttctggaagacttggagttcagcttttctttgagaaaagaacaaagaacggcactgaagtcattcttaaagaaggaagatgtgttcggagttttgccgaccggatacggcaaaagtttaatctatcaactagcccttcttcgttgctctgcctggttgtagcgctatcctattacgtgcagagggaatttgacagacaacgtttatcccgcccctcggattgagctctgccaatggggagttcccagacctcaacatctggatgtgggtctggcttgtcaggctaagatTGACCTTGATTAGTTAGAAAAGTTATTTATTAACGTTGACCTATTAAGTCAGGTAAATACGGGAAAGAGCTATCAACATGTTTAAACGCTCTgagcaataaaatacaacacatcgTCTTTGTAGCGTCCATGTTGTTTCCACATTATGAATATTCCCCCCCCATGATTTTAAGCAGATTTATGGACGTTTACTAGCAATGAACATCAGAAACAAGAtaatatttcacaataaaacaagcaaatttaaacaaaagaGGTCATTTGTGTTGCAGAAATTAGATTTTTCTCTTATTTCCTATCTTGTTATCCACCTTGTGACCCCTCAGATTATTTTGCCACCCTGTCGGGGGGTCTCACGCctcaggttgggaaccactgcccacacaaaaataaatgaaataagcaGAAAGGATGAATGCCTGTAAGAACATGTGTGATGACTGTCTGAATCATCTGGAGCCGAAATTCCAACGCACCTCAATGAGTTCAGACGGATGATTAACGTGTGGCGTCATCAGGGTGGCTTCGTTTCGACGCTCGACTACTGCAATTTCCCTTTTCTCTGGTTTAAATACTACCCTCTCTAAAACCAGTGCCTGCAAgtgctcattttttttttattttaaagtgctgCTGCTCACATATAATGGTCTAGCTCCACCACACTTAATGAGCCTCATCACACGCTGGAACATTTCAGCAGGGAAGACTGAATCCCCAGGCAGCAGTTTTTTCTCCTGTGATCCATTTAAATACAATAATCTCTCAGCGAAAAACCTGTTTCTTCATGTGCAGAACGTCTCTCTATGATGCAGGAAAGTGGCAGTGTGGCTGCActattattgtctttttttttagttcttCCTCGTCTTAGGAGCGCTCCTgaattggtattgaaaaaaactatttctttCTAGAAATACAAAGTAGATAAATATTTTTCTCACATGGTCAGCTCTTCAGTAGTTCATTTCACTTCTTAGAAGGGATTTCCCAAATCATTGCTGCATTAACTAGCAGGGCACTCAAGGCCGTGCcttatctcacaatgttaacaaaagtgaaaaataaatttgtgtatgttgtgtaatgtaatgtcttctgtgaaaacGACTTGGCGAGTAGTCACCACGTCCCAAAGCTTCCAGCACCACCTATTAGGTGAGGACATGTGAACTTTCTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306440 lncRNA upstream 16701 4737335 ~ 4738306 (+) True G225935
TU306397 lncRNA upstream 45738 4708863 ~ 4709269 (+) True G225901
TU306391 lncRNA upstream 96376 4658184 ~ 4658631 (+) True G225895
TU306388 lncRNA upstream 98188 4656495 ~ 4656819 (+) True G225892
TU306387 lncRNA upstream 101647 4652967 ~ 4653360 (+) True G225891
TU306449 lncRNA downstream 4228 4763000 ~ 4763729 (+) True G225943
TU306466 lncRNA downstream 105086 4863858 ~ 4868807 (+) True G225955
TU306484 lncRNA downstream 320707 5079479 ~ 5163773 (+) True G225973
TU306501 lncRNA downstream 425141 5183913 ~ 5185566 (+) True G225985
TU306502 lncRNA downstream 426895 5185667 ~ 5186483 (+) True G225986
XM_039792032.1 mRNA upstream 5765 4734262 ~ 4749242 (+) True dmtf1
XM_039791702.1 mRNA upstream 58824 4688927 ~ 4696183 (+) True LOC120553359
XM_039791696.1 mRNA upstream 160865 4590710 ~ 4594142 (+) True kics2
XM_039792158.1 mRNA upstream 191735 4543174 ~ 4563272 (+) False LOC120553579
XM_039791119.1 mRNA downstream 34515 4793287 ~ 4804242 (+) True LOC120553055
XM_039791066.1 mRNA downstream 476378 5235150 ~ 5238344 (+) True LOC120553019
XM_039791065.1 mRNA downstream 477826 5236598 ~ 5238344 (+) False LOC120553019
XM_039792019.1 mRNA downstream 522486 5281258 ~ 5373637 (+) True abcc9
XM_039792018.1 mRNA downstream 524987 5283759 ~ 5373637 (+) False abcc9
TU306390 other upstream 97038 4657444 ~ 4657969 (+) True G225894
unassigned_transcript_1479 other upstream 558192 4196705 ~ 4196815 (+) True trnal-caa_19
unassigned_transcript_1478 other upstream 561095 4193802 ~ 4193912 (+) True trnal-caa_18
unassigned_transcript_1477 other upstream 564221 4190676 ~ 4190786 (+) True trnal-caa_17
unassigned_transcript_1476 other upstream 564668 4190229 ~ 4190339 (+) True trnal-caa_16
XR_005638175.1 other downstream 524987 5283759 ~ 5373203 (+) False abcc9
XR_005638176.1 other downstream 524987 5283759 ~ 5373203 (+) False abcc9
XR_005638177.1 other downstream 524987 5283759 ~ 5373203 (+) False abcc9
unassigned_transcript_1480 other downstream 2388497 7147269 ~ 7147340 (+) True trnaw-cca_35
TU307013 other downstream 2559768 7318540 ~ 7321049 (+) False snrpf

Expression Profile