RNA id: TU306552


Basic Information

Item Value
RNA id TU306552
length 3639
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G226027
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 5544846 ~ 5552199 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCGACTGTCCCGCGACGACTTGGGCTACACAGtaatatacatacaaacactTTGATGTATATTTACTATGTTGTAGTGAGAACAGCATAGTGAGTTGTCACTGGGGATGGAGTCAACTTTACTATGTggtagaaaacaaaaacaatgtgcaCACGAGGGGGGAAAGAAGaccagaaagagagaaagagagagcgaaaagaggagagaaTGGCGGGGAGAGGTTGTGAAACAGTACAACATCGGACAGCCACTGGAACAtaacaacacagagagagacaagtaTTAGGAAAAATGGTTTAATATAGGAGACAGAAGCAAAAAACTGCATCACACAAGAACATACGTTTACAAAAATAATTCTGACTGCTTCAGCTACACAGTTAGTTCACAGAGAAGGACAGAGAAACCGGAAAAATCTAAACAGCTAAAAGCAAAAAAGTTTTCTAATTAGTTGATCTCTTTATTAAACTAATACATTAATCCACTGAAGGTGACTAAATATttctattccttttttttttttctttcttttttttctgctctatAATTGTCTTAATCGTGTAGACGGCACAATACAGAAGTCAAATGAAACTTACCGCTGTTGTATAGACAAACTCGCTAGAACTATTTaagaaaagcaacaacaacaaaaaaaacgataaaaaaGGATGCGAcgcttaccccccccccccctgtttttcggaaagaaaagaaaagaaaagaaagaaagaaggaaaaggaagGCAGAAAGAAAGAACAACACTCAAGTGAGGAAAAAGAAGTGAAAGAAATGAAGCCAAAGATCTTCTAGAAAAATCTTATATCAAAAGCCAACGTTCTTGATGACCAGCTAGAAATCATACTCGGGGACCAGTCAGGGTCAGGCCACACCACCAGGCCAgacagcgttttttttttttctttttttcttttttttgaagattttttttgttgttgtatccTTTAATCTCCAGTATAAAAAATTCCACTGGTACAAAATGCATAAGTACAATCAGTTGTAGAAATAGGAAAGCCTGCAtttgttgtacttttttttttgttttaaattcccATCCAGTGACAGATTTCCAAGTGttgtcaaacaaacatacatCACGCTTAACAGGATCCAACCGAAATGCACTGACTTTGGCTTCTCTCAAGACAATAACTTTGAAACTACTGAAAAATTTTTTTTGAgcatcaaaataaacaaaaataacaatttcTGGATAACTTCTACAGACAACAAgctcttcattttttttcatttttttttttttaacggcacggaaagagaaaaacacaaacacgaAACATTTCTTTTCCTCAAAAAACTTTGACATAAGCCATAAATGCAAAGAAACGACAAGttcaatcaattttttttttttcctttcagatTTCATTGTTTGATAAATAAGATAATTAAGAAAGAAAGGAGAACAGAGAAGTGAACAGTGACGAGATAGAGAGATTACGACGAGCATCGGCTACATGACAGCCCCTGAGGTGAGCCGCTCCACAGGAAACCCCGTTTTCCACGGCCCTCTTTGTGCTTCGACATTGAAACAAAAGACGAGATGCTTCCCCACTAGAGACTGTGCAACGTCGGGACTAGTGTGCAACTCCGTGAGATTTGGCAACATAGTTTTCTTTTGGGACagttaaaaatgtcagaaaatcgCGCACACAGACGTATAAAGAAGCGAGTTCGACTTAGCACGGATTATGTACACTGTAAAACCTTTCACCGTAAATTTACAGCAGCATCGCCAGTAAagtgtttatttacagtaaacttactgtttttaaagtgctcatattatgctcatttccaggttcataattgtatttagagtttatatcagaataggtttacatggtttaattttcaaaaaacaccatatttttgttgtactgcacattgctgcagctcctcttttcaccctgtgtgttgagctctctgctTTAGCTACAGAGGGAGGCGTCTCACCTCTGTTccgtctttgttgggagtcgcacatgcgcagtagctagggaaggactactagccagtcagaagcagagtatgagggcgtgccctgacagtagctaggtaaggactactagccagtcaggagcagagtatgagggcgtgccctgacagtagctaggtaaggactactagccagtcaggagcagagtatgagggcgtgccctgacagtacctaggtaaggactactagccagtcaggagcagagtatgagggcgtgccctgacagtacctaggtaaggactactagccagtcagaagcagagtatgagggcgtgccctgacagtatctaggtaaggactactaaccagtcagaagcagagtatgagggtgtgccctgacagtatctaggtaaggactactagccagtcagaagcagagtatgagggcgtgccacgctagcagctaggcgagcgttataacgtgtgttacaaagtgaccatgtctgtctctgaagtaaaggctggactacaatagagctgtttggagcagttggtgaacagtgttttctgttggagatggtaagtccctttgggggggactttgggctttttcactttgttaacCTATAAtatgcacaaaaaatatatataacacaataaaggaaagggaaaaaagccaaaaagcataatatgagcactttcaaTTTGaaggtattttactgtaaatatagACAGTTTCTTACCGTATTATTTGAATTTACAGTCATATACTGGCTACAGTGGAATTCCcgccttttcctttattttcccaagatgcaCTGGTGTTAACAGTAAATGCCTGTAATCTGTAATTATTATgatctcccagaatgcattgccatttACAGGATGATCCTGTGTACCATTAAAGCGGTAAGAGACTGTGAGATTTCCGCTGTAAATGTACACATCGAAGGTTTTACAGTGTCGCCTCCAAACTTAAACAGATAAAAACAATTACGCAATAACGCGTGCGAGAGTGAAATGTGCAATCGTGGTTCCTCGGATgcaaacgtttttttttgtctggagCGGTTACGACGTGGAAACCTGCTCACGCGCCGGTCAGAAAAAGTAACACTGTTTTGGACTTGGGAAAACTCCTTCCTGTCCAGCTTTTTTTATACAGGTAGTTATGGCTGTTTGTGGCACTGCTCATGTGTGTACTGCATttaggaaagagaaaaaagaaaaaaagaaagtctgcTCGCCTCCCTTCCGTGAGATCACATAAAGTTTGGTATTGGGTTTTTGGACTTTGAGAGGATAATGAAAAGTGTATTGCCTTCATATCTTGGCTGCggctgttgttctgtgtgtgtttgtgtgtgtgtgtgtttgtgtgtgtacctgcggACGTGACCCTTTCCTCTCCAACCGACAAGCGCTTTTTATTTCCCCTGTCGCTACTCCAATAAAGACGTCTCTCCACATAGCTCCGTTTCTAATAAGCCCGGTGAGCCATGGGAGACAACAACCAGGGCCGAAGATCCTTTTTCAAACTTTCCTCGCCTCCTTCACCGCTGCGAGGACAAACCGCCATAGCGCGTTCCATTTCTACTCGGAAGTCAGGTTTTTCCAAAGTCGGAAGCACACGGATTTTTAGAGCTTGTGACTCGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306525 lncRNA upstream 132844 5374284 ~ 5412002 (+) True LOC120553187
XR_005638126.1 lncRNA upstream 132844 5405930 ~ 5412002 (+) False LOC120553187
TU306531 lncRNA upstream 216477 5327996 ~ 5328369 (+) True G226014
TU306499 lncRNA upstream 340687 5186966 ~ 5204159 (+) True G225983
TU306502 lncRNA upstream 358363 5185667 ~ 5186483 (+) True G225986
TU306557 lncRNA downstream 3711 5552253 ~ 5552473 (+) True G226028
TU306558 lncRNA downstream 3979 5552521 ~ 5553325 (+) True G226029
TU306571 lncRNA downstream 201586 5750128 ~ 5776433 (+) True G226042
TU306625 lncRNA downstream 370552 5919094 ~ 5919414 (+) True G226085
TU306637 lncRNA downstream 549136 6097678 ~ 6097908 (+) True G226097
XM_039791340.1 mRNA upstream 145543 5393640 ~ 5399303 (+) True echdc3
XM_039791339.1 mRNA upstream 151906 5383033 ~ 5392940 (+) False kcnj8
XM_039791338.1 mRNA upstream 151906 5383034 ~ 5392940 (+) True kcnj8
XM_039792020.1 mRNA upstream 171209 5283759 ~ 5373637 (+) False abcc9
XM_039792084.1 mRNA downstream 965303 6513845 ~ 6519452 (+) True kin
XM_039791177.1 mRNA downstream 986633 6535175 ~ 6553086 (+) True itih5
XM_039791178.1 mRNA downstream 1030570 6579112 ~ 6636681 (+) False sfmbt2
XM_039791183.1 mRNA downstream 1030570 6579112 ~ 6636681 (+) False sfmbt2
XM_039791182.1 mRNA downstream 1031016 6579558 ~ 6636681 (+) False sfmbt2
XR_005638175.1 other upstream 171643 5283759 ~ 5373203 (+) False abcc9
XR_005638176.1 other upstream 171643 5283759 ~ 5373203 (+) False abcc9
XR_005638177.1 other upstream 171643 5283759 ~ 5373203 (+) False abcc9
TU306390 other upstream 886877 4657444 ~ 4657969 (+) True G225894
unassigned_transcript_1479 other upstream 1348031 4196705 ~ 4196815 (+) True trnal-caa_19
unassigned_transcript_1480 other downstream 1598727 7147269 ~ 7147340 (+) True trnaw-cca_35
TU307013 other downstream 1769998 7318540 ~ 7321049 (+) False snrpf
XR_005638075.1 other downstream 1774528 7323070 ~ 7332259 (+) True amdhd1
TU307011 other downstream 1847952 7396494 ~ 7400399 (+) False nrip2
TU307294 other downstream 2878149 8426691 ~ 8432697 (+) True rps16