RNA id: TU306571



Basic Information


Item Value
RNA id TU306571
length 205
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G226042
representative True

Chromosome Information


Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 5750128 ~ 5776433 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


actgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgtgtAtatataactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU306558 lncRNA upstream 196803 5552521 ~ 5553325 (+) True G226029
TU306557 lncRNA upstream 197655 5552253 ~ 5552473 (+) True G226028
TU306554 lncRNA upstream 197929 5544846 ~ 5552199 (+) True G226027
TU306556 lncRNA upstream 197929 5544846 ~ 5552199 (+) False G226027
TU306550 lncRNA upstream 201586 5544846 ~ 5548542 (+) False G226027
TU306625 lncRNA downstream 142661 5919094 ~ 5919414 (+) True G226085
TU306637 lncRNA downstream 321245 6097678 ~ 6097908 (+) True G226097
XR_005638108.1 lncRNA downstream 406611 6183044 ~ 6289899 (+) True LOC120553126
XR_005638192.1 lncRNA downstream 652661 6429094 ~ 6501060 (+) True LOC120553621
TU306694 lncRNA downstream 906285 6682718 ~ 6686625 (+) False prkcq
XM_039791340.1 mRNA upstream 350825 5393640 ~ 5399303 (+) True echdc3
XM_039791339.1 mRNA upstream 357188 5383033 ~ 5392940 (+) False kcnj8
XM_039791338.1 mRNA upstream 357188 5383034 ~ 5392940 (+) True kcnj8
XM_039792020.1 mRNA upstream 376491 5283759 ~ 5373637 (+) False abcc9
XM_039792084.1 mRNA downstream 737412 6513845 ~ 6519452 (+) True kin
XM_039791177.1 mRNA downstream 758742 6535175 ~ 6553086 (+) True itih5
XM_039791178.1 mRNA downstream 802679 6579112 ~ 6636681 (+) False sfmbt2
XM_039791183.1 mRNA downstream 802679 6579112 ~ 6636681 (+) False sfmbt2
XM_039791182.1 mRNA downstream 803125 6579558 ~ 6636681 (+) False sfmbt2
XR_005638175.1 other upstream 376925 5283759 ~ 5373203 (+) False abcc9
XR_005638176.1 other upstream 376925 5283759 ~ 5373203 (+) False abcc9
XR_005638177.1 other upstream 376925 5283759 ~ 5373203 (+) False abcc9
TU306390 other upstream 1092159 4657444 ~ 4657969 (+) True G225894
unassigned_transcript_1479 other upstream 1553313 4196705 ~ 4196815 (+) True trnal-caa_19
unassigned_transcript_1480 other downstream 1370836 7147269 ~ 7147340 (+) True trnaw-cca_35
TU307013 other downstream 1542107 7318540 ~ 7321049 (+) False snrpf
XR_005638075.1 other downstream 1546637 7323070 ~ 7332259 (+) True amdhd1
TU307011 other downstream 1620061 7396494 ~ 7400399 (+) False nrip2
TU307294 other downstream 2650258 8426691 ~ 8432697 (+) True rps16

Expression Profile