Item | Value |
---|---|
RNA id | TCONS_00072843 |
length | 864 |
RNA type | processed_transcript |
GC content | 0.52 |
exon number | 4 |
gene id | XLOC_037003 |
representative | True |
Item | Value |
---|---|
chromosome id | NC_007120.7 |
NCBI id | CM002893.2 |
chromosome length | 56459846 |
location | 13229585 ~ 13251327 (+) |
genome version | GRCz11_2017_zebrafish_Genome |
species | zebrafish (Danio rerio) |
id | name | namespace |
---|---|---|
GO:0061400 | positive regulation of transcription from RNA polymerase II promoter in response to calcium ion | biological_process |
GO:0035865 | cellular response to potassium ion | biological_process |
GO:0005634 | nucleus | cellular_component |
GO:0001228 | DNA-binding transcription activator activity, RNA polymerase II-specific | molecular_function |
GO:0003677 | DNA binding | molecular_function |
GO:0003700 | DNA-binding transcription factor activity | molecular_function |
id | description |
---|---|
ko03000 | Transcription factors |
id | description |
---|---|
ZDB-GENE-070912-172 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within positive regulation of transcription from RNA polymerase II promoter in response to calcium ion. Predicted to be active in nucleus. Orthologous to human CARF (calcium responsive transcription factor). |
ensembl_id | ENSDART00000132770 |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TCONS_00072841 | lncRNA | upstream | 4673 | 13233575 ~ 13234144 (+) | False | XLOC_037003 |
TCONS_00072835 | lncRNA | upstream | 148954 | 13076852 ~ 13089863 (+) | True | XLOC_037001 |
TCONS_00072832 | lncRNA | upstream | 295062 | 12943279 ~ 12943755 (+) | False | XLOC_037000 |
TCONS_00075073 | lncRNA | upstream | 769774 | 12461619 ~ 12469043 (+) | True | XLOC_036995 |
TCONS_00072807 | lncRNA | upstream | 2300348 | 10936773 ~ 10938469 (+) | True | XLOC_036987 |
TCONS_00075074 | lncRNA | downstream | 222548 | 13469074 ~ 13471527 (+) | True | XLOC_037005 |
TCONS_00075075 | lncRNA | downstream | 865949 | 14112475 ~ 14117000 (+) | True | XLOC_037014 |
TCONS_00072873 | lncRNA | downstream | 905642 | 14152168 ~ 14197503 (+) | True | XLOC_037016 |
TCONS_00075076 | lncRNA | downstream | 2271007 | 15517533 ~ 15530690 (+) | True | XLOC_037018 |
TCONS_00074887 | lncRNA | downstream | 2281085 | 15527611 ~ 15529457 (+) | True | XLOC_037019 |
TCONS_00072837 | mRNA | upstream | 4945 | 13229585 ~ 13233872 (+) | False | XLOC_037003 |
TCONS_00072836 | mRNA | upstream | 26027 | 13120419 ~ 13212790 (+) | True | XLOC_037002 |
TCONS_00072834 | mRNA | upstream | 127654 | 12959760 ~ 13111163 (+) | False | XLOC_037001 |
TCONS_00072830 | mRNA | upstream | 284993 | 12907574 ~ 12953824 (+) | False | XLOC_037000 |
TCONS_00072833 | mRNA | upstream | 287478 | 12948511 ~ 12951339 (+) | True | XLOC_037000 |
TCONS_00072845 | mRNA | downstream | 382109 | 13628635 ~ 13672200 (+) | False | XLOC_037006 |
TCONS_00072846 | mRNA | downstream | 382129 | 13628655 ~ 13635451 (+) | False | XLOC_037006 |
TCONS_00072847 | mRNA | downstream | 391803 | 13638329 ~ 13640372 (+) | False | XLOC_037006 |
TCONS_00072848 | mRNA | downstream | 395142 | 13641668 ~ 13672200 (+) | True | XLOC_037006 |
TCONS_00072849 | mRNA | downstream | 435607 | 13682133 ~ 13711991 (+) | False | XLOC_037007 |
TCONS_00072822 | other | upstream | 410697 | 12828005 ~ 12828120 (+) | True | XLOC_036996 |
TCONS_00072821 | other | upstream | 783874 | 12444524 ~ 12454943 (+) | True | XLOC_036994 |
TCONS_00072820 | other | upstream | 784059 | 12444519 ~ 12454758 (+) | False | XLOC_036994 |
TCONS_00072815 | other | upstream | 1790908 | 11447777 ~ 11447909 (+) | True | XLOC_036991 |
TCONS_00072801 | other | upstream | 2894837 | 10343864 ~ 10343980 (+) | True | XLOC_036980 |
TCONS_00072844 | other | downstream | 202003 | 13448529 ~ 13448648 (+) | True | XLOC_037004 |
TCONS_00072854 | other | downstream | 467885 | 13714411 ~ 13728936 (+) | True | XLOC_037008 |
TCONS_00072861 | other | downstream | 518731 | 13765257 ~ 13786953 (+) | True | XLOC_037009 |
TCONS_00072865 | other | downstream | 753277 | 13999803 ~ 14003253 (+) | True | XLOC_037011 |
TCONS_00072867 | other | downstream | 764348 | 14010874 ~ 14014330 (+) | True | XLOC_037012 |