RNA id: TCONS_00072843



Basic Information


Item Value
RNA id TCONS_00072843
length 864
RNA type processed_transcript
GC content 0.52
exon number 4
gene id XLOC_037003
representative True

Chromosome Information


Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 13229585 ~ 13251327 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence


AGGTATTACGTCCAGCTCCCTACAGAAAAAGCCCACCTGTACCATGATGTGGAGACTGTAAACCTGCCTCCTCTTCCAGATCAGATCTGCTTCACAGAAGACCATCCTCATGAAGAGGAAGACACAGAAGAGCTGGGGTTTCAAGCCATGCAGGACGTCCTTGTGGAGGATGGGGTATCCCTACCCGAGTCTCGACTACACCCGCTGGTGGCAGAGAAGATCTGTGAATTGGTGGCTCATGGTCATAACCAGGTCTACACCGTCCGCAAACAGCTCAGGAGGTTTGTTGAACGTGAGATGTTCAAGTCAGAGGAAGTGCCTGAGAGACACAATCTGTGTTACTTTCCCACCGTCAATGACATCAAGAACCACATCCACGAGGCGCAGAAAACTCTTGGACCACTGGACGGTTCAGATAATGAGTTTCCTCTGAGAAGGAAGAGCTCATGGAAGGAAGTGACACTCTTTCTTCAGAGGCTGTGCATCTCTTCAGCTCCCTCACATCACTGCAGCCCAAGATCTTTGCACATCTACAGGAGCGCTTTTCTCTCATCTGATAGACCATTCAGCTCCAGCCGCCCTTGTGTCCAGTGGAAGACCCTGCTCAACCTTTAACAGCAGCACCAGAAGCCCAAGAGCTGTCCAGCCCTGCAGCCTCACAGCCTGCACTCCTGAGTCCATCCCAATTTCTCCAGTCTAGTCCCAGTGCTGGCGAAGGCAGGTCTGTGTGTGAGACCCCGACCCTGCTTGGCATGAACCAGCTAGTGAGTGTCTCTAATGCTGGAGCTAATGGAGGAATCACACAGATCCTGCTGGAGGATGGACAGGCTATTCCAGTCCAGATTGTGGAGCCGGCAAACATAG

Function


GO:

id name namespace
GO:0061400 positive regulation of transcription from RNA polymerase II promoter in response to calcium ion biological_process
GO:0035865 cellular response to potassium ion biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-070912-172 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within positive regulation of transcription from RNA polymerase II promoter in response to calcium ion. Predicted to be active in nucleus. Orthologous to human CARF (calcium responsive transcription factor).

Ensembl:

ensembl_id ENSDART00000132770

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TCONS_00072841 lncRNA upstream 4673 13233575 ~ 13234144 (+) False XLOC_037003
TCONS_00072835 lncRNA upstream 148954 13076852 ~ 13089863 (+) True XLOC_037001
TCONS_00072832 lncRNA upstream 295062 12943279 ~ 12943755 (+) False XLOC_037000
TCONS_00075073 lncRNA upstream 769774 12461619 ~ 12469043 (+) True XLOC_036995
TCONS_00072807 lncRNA upstream 2300348 10936773 ~ 10938469 (+) True XLOC_036987
TCONS_00075074 lncRNA downstream 222548 13469074 ~ 13471527 (+) True XLOC_037005
TCONS_00075075 lncRNA downstream 865949 14112475 ~ 14117000 (+) True XLOC_037014
TCONS_00072873 lncRNA downstream 905642 14152168 ~ 14197503 (+) True XLOC_037016
TCONS_00075076 lncRNA downstream 2271007 15517533 ~ 15530690 (+) True XLOC_037018
TCONS_00074887 lncRNA downstream 2281085 15527611 ~ 15529457 (+) True XLOC_037019
TCONS_00072837 mRNA upstream 4945 13229585 ~ 13233872 (+) False XLOC_037003
TCONS_00072836 mRNA upstream 26027 13120419 ~ 13212790 (+) True XLOC_037002
TCONS_00072834 mRNA upstream 127654 12959760 ~ 13111163 (+) False XLOC_037001
TCONS_00072830 mRNA upstream 284993 12907574 ~ 12953824 (+) False XLOC_037000
TCONS_00072833 mRNA upstream 287478 12948511 ~ 12951339 (+) True XLOC_037000
TCONS_00072845 mRNA downstream 382109 13628635 ~ 13672200 (+) False XLOC_037006
TCONS_00072846 mRNA downstream 382129 13628655 ~ 13635451 (+) False XLOC_037006
TCONS_00072847 mRNA downstream 391803 13638329 ~ 13640372 (+) False XLOC_037006
TCONS_00072848 mRNA downstream 395142 13641668 ~ 13672200 (+) True XLOC_037006
TCONS_00072849 mRNA downstream 435607 13682133 ~ 13711991 (+) False XLOC_037007
TCONS_00072822 other upstream 410697 12828005 ~ 12828120 (+) True XLOC_036996
TCONS_00072821 other upstream 783874 12444524 ~ 12454943 (+) True XLOC_036994
TCONS_00072820 other upstream 784059 12444519 ~ 12454758 (+) False XLOC_036994
TCONS_00072815 other upstream 1790908 11447777 ~ 11447909 (+) True XLOC_036991
TCONS_00072801 other upstream 2894837 10343864 ~ 10343980 (+) True XLOC_036980
TCONS_00072844 other downstream 202003 13448529 ~ 13448648 (+) True XLOC_037004
TCONS_00072854 other downstream 467885 13714411 ~ 13728936 (+) True XLOC_037008
TCONS_00072861 other downstream 518731 13765257 ~ 13786953 (+) True XLOC_037009
TCONS_00072865 other downstream 753277 13999803 ~ 14003253 (+) True XLOC_037011
TCONS_00072867 other downstream 764348 14010874 ~ 14014330 (+) True XLOC_037012

Expression Profile


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