RNA id: TU306968


Basic Information

Item Value
RNA id TU306968
length 391
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G226318
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 7271317 ~ 7271707 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttttgctaAATTAAAtggtttattaaaaatgtaataataacttataacaataactgaTTTCACCAGTaagttaaacgacaaaaacaaccactggatgggaaaagggtattttacaataactttgaatgcagcatgaggctggcgaggcggatttcaagtgaacgcaacatctgtgttgttgttccgacaacagcagctgcacactggtaggtaacggtaggctaacgttacctgctgccaagtgcagtgttaactagcgtgacatgcggcgatgtttaggttgcttctaatgtctgttttttctgagcatcagagagaagcgcaggaatttcagtggcaccgaaatccgcgttgcaattcggtccggtagattataacggtcgttaaggca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU306967 lncRNA upstream 564 7269104 ~ 7270753 (+) True G226317
TU306965 lncRNA upstream 2559 7267827 ~ 7268758 (+) True G226316
TU306966 lncRNA upstream 3098 7267509 ~ 7268219 (+) False G226316
TU306949 lncRNA upstream 54931 7213392 ~ 7216386 (+) True G226306
TU306925 lncRNA upstream 113430 7157490 ~ 7157887 (+) True G226292
TU306969 lncRNA downstream 370 7272077 ~ 7272316 (+) True G226319
TU307019 lncRNA downstream 63347 7335054 ~ 7346162 (+) True G226352
TU307033 lncRNA downstream 95669 7367376 ~ 7368168 (+) False klhl42
TU307039 lncRNA downstream 153350 7425057 ~ 7426170 (+) False ascl1a
TU307093 lncRNA downstream 258735 7530442 ~ 7532020 (+) False LOC120553154
XM_039791597.1 mRNA upstream 3867 7257270 ~ 7267450 (+) True metap2a
XM_039791418.1 mRNA upstream 15432 7240852 ~ 7255885 (+) True vezt
XM_039791419.1 mRNA upstream 15432 7240852 ~ 7255885 (+) False vezt
XM_039791420.1 mRNA upstream 15432 7241349 ~ 7255885 (+) False vezt
XM_039792095.1 mRNA upstream 127312 7115962 ~ 7144005 (+) True lamb1b
XM_039791101.1 mRNA downstream 46810 7318517 ~ 7321189 (+) True snrpf
XM_039791041.1 mRNA downstream 51363 7323070 ~ 7330021 (+) False amdhd1
XM_039792444.1 mRNA downstream 91618 7363325 ~ 7368216 (+) True klhl42
XM_039792100.1 mRNA downstream 98735 7370442 ~ 7400399 (+) True nrip2
XM_039791252.1 mRNA downstream 151911 7423618 ~ 7426254 (+) True ascl1a
unassigned_transcript_1480 other upstream 123977 7147269 ~ 7147340 (+) True trnaw-cca_35
XR_005638175.1 other upstream 1898114 5283759 ~ 5373203 (+) False abcc9
XR_005638176.1 other upstream 1898114 5283759 ~ 5373203 (+) False abcc9
XR_005638177.1 other upstream 1898114 5283759 ~ 5373203 (+) False abcc9
TU306390 other upstream 2613348 4657444 ~ 4657969 (+) True G225894
TU307013 other downstream 46833 7318540 ~ 7321049 (+) False snrpf
XR_005638075.1 other downstream 51363 7323070 ~ 7332259 (+) True amdhd1
TU307011 other downstream 124787 7396494 ~ 7400399 (+) False nrip2
TU307294 other downstream 1154984 8426691 ~ 8432697 (+) True rps16
XR_005638164.1 other downstream 1862887 9134594 ~ 9173220 (+) True lhfpl3

Expression Profile