RNA id: XM_039792444.1


Basic Information

Item Value
RNA id XM_039792444.1
length 3801
RNA type mRNA
GC content 0.46
exon number 4
gene id klhl42
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 7363325 ~ 7368216 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACATCGACACCGGTGAAGCTGTTGAGTAAACTCGTAGCACATGAATATTTTATCTCAAGCtctatgcttttattttgaaggcaccACCCACCGCCTGTCACAGCCTGTAGAATTATTGGTCTTTTCACTACTCTCTCAGCTAAACCCTTTCAGACAGTGACGCCACGAGTGTGATAAGACACACTTTatcttgattgacagctggaTATAGACAACTGGGAGCAGGCCTGCTGGCTGCTGAGCTTATTATAACTCTGCACTGACAAATAAGTAGGAGCTTTGAGAATAACACTTCAATTGTGCAATACAATGTAGTTTAGGTTAAAAAGTCCACGTTCAGATTTATTACAAATGTGTTGAtctgataaaaaaacataatttaatctATAACTAATCTATCTACTTTACACAAggacaaaatggaaaacaaagtaaatggaaAGAGTCGAGGTGACAGCAGCAAACAACAGCTCTGCAGAAATATCCTCACGAAGAAGAAGTATGAAAACCGGATGTGACGTATAGTGCagaatcaaaacagttaacatTTGACAGCTCGGCACTGTCCCGCTAAAGGCTTATAAAATGCAATGGGAAAGGTTACTGCCAATGTTAGAAATAAACTACACTATTTAGATACTGGAGCGAGTTTTTACCGGACTGTCGAGGAATGCTAATGCGAGGAAAAGGTACTTTGGGCTAgttttagcagcagcagcagcagcagcagcatctctCTATGTAACTACCTGGTAAGCTTCCACGGCTAACGAAAATTGCTCCATGGCTATCTATGGGCTGAACATTACCATATATAGACCGGCCACAGAACTCCCTCGCCGGTGAAATGTAAACGGTGACTCCCGGAGGAGGCTGACAAAGGGCGAGCAAAGACAAAACTCAGCCTGGAAGATAAAAACACGCTTCGCCATGTCATCTGAGCAGATTATTGCCATCGTCATGGATGACAAAATCTACGAGGTGAATAAAAAGAAGCTGATAGAGAAGAGCGACTACTTCCGTGCACTGTACAGCTCCGGGATGAGGGAGTCCACCGAGGACTCGGTGCAGCTGCAGGGGCTCAGTGTCCCCGGGCTGGAGCTGGTCCTGGAGTTCATCAACACCTCCAAGGTTCAGGTTGTCAACGAGACTCTGGAGGACCTGATTGAGACCGCCTCCTTCTTACAGGTCACCTCCATCCTCAAGCTCCTCACCTCGGAGATCCGGCTGGACAACTGCGTGGAGCTGTACAGCCTCTCTGAAGTTTACGGGACTCATGATCTGCGTAATGCTTGCCTCAAATACATGAGCTGCTACTATCACCCCATGCTTAGGCGGCCAGAGTTCAGCAGCctcccctctgctgtcagagtCCAAGTCAGGGAGATGCGCATGAAAGGCACCGCCACCTTGGTAGCCATCGGAGACTTCACCTGTCTCTCCCTGGACGTGCCCGATCAGGATGAACCCTGGTCCATGCTGAGGTATGGAGAGGTGGAGCAGCGCTGGAAACCGCTCGCAAACAACCTGCCTCCAGATATGATCAACGTCAGAGGATATGGCTCAGCTGTCCTCGATAACTACCTGTTCATAGTCGGTGGATACAGGATGACGAGTCAGGAGATCTCTGCGGTGCACTGCTACAATCCCTGTAGGAACGAGTGGAACCAGGTGGCTCCACTCAACCAAAAGAGGTCCAACTTCAAACTTTTGTCAGTACAAGGGAAGATGTACGCTGTAGGGGGCCAGAGTCTGGGCACAGTGGAGTGTTACAGCCCAGAACAGGACTGGTGGACCTGTGTGTCCTCGATGCCAAACCCACTGGCTGAGTTCTCTGCATGTGAATGCCAAGGGATGATCTACGTTATGGGTGGATACACTGCAAGAGacAGGAACACAAGTGTTCTCCGTTACTGCCCCACCTCTGACACCTGGACGGTGTTTCGGTCCTGTCCGGCGCACATCCGCAAGCAGCAGATGCTGTCGGTGGAGGACACAATCTACCTGGTGGGTGGCTACACCCACGAGCTGGAGGTGGGCCAGCGGCAGCGGCGTCCCAGTCAGACGGAGGACGTGCTGACGGTGCAATCCTACAACGTCTCCACGGGGGAGTGGATCCAGCTGAAGGAGAACACGTCCAAGTCTGGCCTGAACCTGACGTGCACGCTGCACAACGATGGCATCTACATCATGAGCAGGGACGTCAGCCTACCCACCAGCCTGGAGCACCGCGTCTTTCTCAAGTACAACATCTTCTCTGATGCCTGGGAGGCGTTCAGACGCTTCCCAGCTCTGGGACAGAACATGCTGCTCTGTTCGCTTTACCTACCCAACGTGCTGTGATTGGGAGGGCTGATGGGAAAGACTAACAGAAGTGGAGACCATGCCAGTGTGTGGCTTGATTGTTCTGGCACAGAATGGGGCTCTGTGGCATTAGTGGAAACTGTATCCGGTTGCCAGGTTGAACACCTCGTGACCTTtgtgcctaaaaaaaaaaccaacctgCACTACATTGTACATACTGCTGCGGAtgcaaatacaaaagctacaatgacaaataaagtgATGAAGCGCTATGGCCCGTAGATCAACAGCATCATAACAGCTTGCCCCAGTTTGTACCTCTCATGTATTAACATTAGTCACAGTGAACATCATCTGTTTTTTCTGAGAAATAATTCCCTGGAAAGTTTAAAAAGCCCAGAAGGACATTAAACAACACTTACTGCTGCTCCTAAGATATTTCCAGGATCTCTAAGACTGTCTTAACCACCTCGATGAGAAAATATGTTGTCTGCTGCACaattaaaaagattttaaaactGTTTCCCAACTTGCGACTTGTTTTCTATCCAGGTGACTCGCCGGTTGCCGTCATTGTTTGGATTGGGAAACAGATTTCCAACTTGGGAAACTGgctaagatgttttttttttttattgtgcagcAGACAGAATATTTTACCATCTAGATGGTTGGAAGAGTCTTAGGATTCTGGAAATATCAACAGAACAGCGGTAAGTGTTGTTTAACAATCCCTCTGGGTTTTTCAAACATCGTCGAGTAATTATTTATATAACGGATGGTTACCACTGTCGGATGAAATGCTAATACATGAGAGGCACACAAACTGGGTCCACATAACATCATGCTTTTAAATCTATAGGCCACAATATTCCCAATGTTTACACTCCCAATATGGCATTGGCGTACATGTTTATCCATAATTCACTACAAACCTTAAGATGTCTTGGAAACAAAACTCATTTCTTGTCCTCATGAACTGTACATAGCAGATAATCATGAAATATGGCTTTGGTTTTACACTGCCAGTTTTATGGGAATTAAAGGTTCCTTGAAAGTTATTGTTTGGGATCAGAGAGTGCTTAATGTGTTGTATGTACACTTGTCTTATTTTCCAGAGATAAACTAAGTGAAGCTTAAAGCGCAATTCCATGAAATGAACGATGCACATGTGCCTTCTGCAACCTCCAGTTGATGGAACTTAatacaaaaaaagcacaaaatgcAAGACTTTGTTACATTACCAGCAACTGACCAAAAgtggtgtttgtttttctctctgctaAAGCAGATTTTGTTTTCACTGATCAAATATTGGAGGTGTGCAGACACGAGAAATAAGCTTCGAAGCAAAACTTTTTTCTGAAATGCTGTTTTGGGTAAATGCAGCACTTTTGATGTTTGATTTGGTGGATTTCAGATTCTCTCTGCATTACATTATTGTTTGCCAGTTTTGGGAATTTAGGTCATGATGAATAAAGACGAAGTTCAGGGGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307019 lncRNA upstream 17163 7335054 ~ 7346162 (+) True G226352
TU306969 lncRNA upstream 91009 7272077 ~ 7272316 (+) True G226319
TU306968 lncRNA upstream 91618 7271317 ~ 7271707 (+) True G226318
TU306967 lncRNA upstream 92572 7269104 ~ 7270753 (+) True G226317
TU306965 lncRNA upstream 94567 7267827 ~ 7268758 (+) True G226316
TU307039 lncRNA downstream 56841 7425057 ~ 7426170 (+) False ascl1a
TU307093 lncRNA downstream 162226 7530442 ~ 7532020 (+) False LOC120553154
TU307120 lncRNA downstream 198514 7566730 ~ 7569202 (+) False LOC120553156
TU307137 lncRNA downstream 247972 7616188 ~ 7707570 (+) False G226452
TU307138 lncRNA downstream 247972 7616188 ~ 7621731 (+) True G226452
XM_039791041.1 mRNA upstream 33304 7323070 ~ 7330021 (+) False amdhd1
XM_039791101.1 mRNA upstream 42136 7318517 ~ 7321189 (+) True snrpf
XM_039791597.1 mRNA upstream 95875 7257270 ~ 7267450 (+) True metap2a
XM_039791418.1 mRNA upstream 107440 7240852 ~ 7255885 (+) True vezt
XM_039792100.1 mRNA downstream 2226 7370442 ~ 7400399 (+) True nrip2
XM_039791252.1 mRNA downstream 55402 7423618 ~ 7426254 (+) True ascl1a
XM_039791251.1 mRNA downstream 141748 7509964 ~ 7524419 (+) True pah
XM_039791253.1 mRNA downstream 157676 7525892 ~ 7532077 (+) True LOC120553154
XM_039791254.1 mRNA downstream 178212 7546428 ~ 7562205 (+) True LOC120553155
XR_005638075.1 other upstream 31066 7323070 ~ 7332259 (+) True amdhd1
TU307013 other upstream 42276 7318540 ~ 7321049 (+) False snrpf
unassigned_transcript_1480 other upstream 215985 7147269 ~ 7147340 (+) True trnaw-cca_35
XR_005638175.1 other upstream 1990122 5283759 ~ 5373203 (+) False abcc9
TU307011 other downstream 28278 7396494 ~ 7400399 (+) False nrip2
TU307294 other downstream 1058475 8426691 ~ 8432697 (+) True rps16
XR_005638164.1 other downstream 1766378 9134594 ~ 9173220 (+) True lhfpl3
TU307644 other downstream 1869048 9237264 ~ 9241349 (+) False ndufb2
unassigned_transcript_1481 other downstream 2824110 10192326 ~ 10192412 (+) True trnay-gua_57

Expression Profile