Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_039791252.1 |
| length | 1511 |
| RNA type | mRNA |
| GC content | 0.49 |
| exon number | 3 |
| gene id | ascl1a |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_053134.1 |
| NCBI id | CM020931.1 |
| chromosome length | 29109922 |
| location | 7423618 ~ 7426254 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| species | eurasian perch (Perca fluviatilis) |
| id | name | namespace |
|---|---|---|
| GO:0010629 | negative regulation of gene expression | biological_process |
| GO:0021575 | hindbrain morphogenesis | biological_process |
| GO:0061195 | taste bud formation | biological_process |
| GO:0002070 | epithelial cell maturation | biological_process |
| GO:0043697 | cell dedifferentiation | biological_process |
| GO:0045893 | positive regulation of transcription, DNA-templated | biological_process |
| GO:0061549 | sympathetic ganglion development | biological_process |
| GO:0070654 | sensory epithelium regeneration | biological_process |
| GO:0021984 | adenohypophysis development | biological_process |
| GO:0045666 | positive regulation of neuron differentiation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0000989 | obsolete transcription factor activity, transcription factor binding | molecular_function |
| GO:0046983 | protein dimerization activity | molecular_function |
| id | description |
|---|---|
| K09067 | ASCL; achaete-scute complex protein |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU307033 | lncRNA | upstream | 55450 | 7367376 ~ 7368168 (+) | False | klhl42 |
| TU307019 | lncRNA | upstream | 77456 | 7335054 ~ 7346162 (+) | True | G226352 |
| TU306969 | lncRNA | upstream | 151302 | 7272077 ~ 7272316 (+) | True | G226319 |
| TU306968 | lncRNA | upstream | 151911 | 7271317 ~ 7271707 (+) | True | G226318 |
| TU306967 | lncRNA | upstream | 152865 | 7269104 ~ 7270753 (+) | True | G226317 |
| TU307093 | lncRNA | downstream | 104188 | 7530442 ~ 7532020 (+) | False | LOC120553154 |
| TU307120 | lncRNA | downstream | 140476 | 7566730 ~ 7569202 (+) | False | LOC120553156 |
| TU307137 | lncRNA | downstream | 189934 | 7616188 ~ 7707570 (+) | False | G226452 |
| TU307138 | lncRNA | downstream | 189934 | 7616188 ~ 7621731 (+) | True | G226452 |
| XR_005638193.1 | lncRNA | downstream | 465155 | 7891409 ~ 7955485 (+) | True | LOC120553625 |
| XM_039792100.1 | mRNA | upstream | 23219 | 7370442 ~ 7400399 (+) | True | nrip2 |
| XM_039792444.1 | mRNA | upstream | 55402 | 7363325 ~ 7368216 (+) | True | klhl42 |
| XM_039791041.1 | mRNA | upstream | 93597 | 7323070 ~ 7330021 (+) | False | amdhd1 |
| XM_039791101.1 | mRNA | upstream | 102429 | 7318517 ~ 7321189 (+) | True | snrpf |
| XM_039791597.1 | mRNA | upstream | 156168 | 7257270 ~ 7267450 (+) | True | metap2a |
| XM_039791251.1 | mRNA | downstream | 83710 | 7509964 ~ 7524419 (+) | True | pah |
| XM_039791253.1 | mRNA | downstream | 99638 | 7525892 ~ 7532077 (+) | True | LOC120553154 |
| XM_039791254.1 | mRNA | downstream | 120174 | 7546428 ~ 7562205 (+) | True | LOC120553155 |
| XM_039791255.1 | mRNA | downstream | 140401 | 7566655 ~ 7569303 (+) | True | LOC120553156 |
| XM_039792172.1 | mRNA | downstream | 166625 | 7592879 ~ 7605838 (+) | False | LOC120553589 |
| TU307011 | other | upstream | 23219 | 7396494 ~ 7400399 (+) | False | nrip2 |
| XR_005638075.1 | other | upstream | 91359 | 7323070 ~ 7332259 (+) | True | amdhd1 |
| TU307013 | other | upstream | 102569 | 7318540 ~ 7321049 (+) | False | snrpf |
| unassigned_transcript_1480 | other | upstream | 276278 | 7147269 ~ 7147340 (+) | True | trnaw-cca_35 |
| XR_005638176.1 | other | upstream | 2050415 | 5283759 ~ 5373203 (+) | False | abcc9 |
| TU307294 | other | downstream | 1000437 | 8426691 ~ 8432697 (+) | True | rps16 |
| XR_005638164.1 | other | downstream | 1708340 | 9134594 ~ 9173220 (+) | True | lhfpl3 |
| TU307644 | other | downstream | 1811010 | 9237264 ~ 9241349 (+) | False | ndufb2 |
| unassigned_transcript_1481 | other | downstream | 2766072 | 10192326 ~ 10192412 (+) | True | trnay-gua_57 |
| unassigned_transcript_1482 | other | downstream | 2768176 | 10194430 ~ 10194516 (+) | True | trnay-gua_58 |
