RNA id: TU307093


Basic Information

Item Value
RNA id TU307093
length 321
lncRNA type sense_over
GC content 0.47
exon number 2
gene id LOC120553154
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 7525892 ~ 7532077 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaaAGCTTTGAGGATGCAAAGACTAAGATGAGGAGATACTCTGCAACCATCAAGCGCCCCTTTGCAGTTCGCTACGACCCCTTTACCTGCAGCGTGGAGGTTCTGGATCAGCCCGGCAAGATCCAAAACGCTCTGAGCCAGATGAGAGAAGAACTGAAGACCCTTCACAGCGCCTTGGAGACATTCAGCTCATCTTAGGACCGGGAACAGATtttctgcagagagagaaaaggatgaACATTTCAACATTGTATAAGAGATCTACTAATACGAACACAAAGGCAATCAAAATGTAGTCAGGTTTGTGAGGTTCCACATGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307039 lncRNA upstream 104272 7425057 ~ 7426170 (+) False ascl1a
TU307033 lncRNA upstream 162274 7367376 ~ 7368168 (+) False klhl42
TU307019 lncRNA upstream 184280 7335054 ~ 7346162 (+) True G226352
TU306969 lncRNA upstream 258126 7272077 ~ 7272316 (+) True G226319
TU306968 lncRNA upstream 258735 7271317 ~ 7271707 (+) True G226318
TU307120 lncRNA downstream 34710 7566730 ~ 7569202 (+) False LOC120553156
TU307137 lncRNA downstream 84168 7616188 ~ 7707570 (+) False G226452
TU307138 lncRNA downstream 84168 7616188 ~ 7621731 (+) True G226452
XR_005638193.1 lncRNA downstream 359389 7891409 ~ 7955485 (+) True LOC120553625
TU307206 lncRNA downstream 492341 8024361 ~ 8028661 (+) True G226505
XM_039791251.1 mRNA upstream 6023 7509964 ~ 7524419 (+) True pah
XM_039791252.1 mRNA upstream 104188 7423618 ~ 7426254 (+) True ascl1a
XM_039792100.1 mRNA upstream 130043 7370442 ~ 7400399 (+) True nrip2
XM_039792444.1 mRNA upstream 162226 7363325 ~ 7368216 (+) True klhl42
XM_039791041.1 mRNA upstream 200421 7323070 ~ 7330021 (+) False amdhd1
XM_039791254.1 mRNA downstream 14408 7546428 ~ 7562205 (+) True LOC120553155
XM_039791255.1 mRNA downstream 34635 7566655 ~ 7569303 (+) True LOC120553156
XM_039792172.1 mRNA downstream 60859 7592879 ~ 7605838 (+) False LOC120553589
XM_039792174.1 mRNA downstream 60978 7592998 ~ 7605838 (+) True LOC120553589
XM_039791873.1 mRNA downstream 337741 7869761 ~ 7887525 (+) True LOC120553463
TU307011 other upstream 130043 7396494 ~ 7400399 (+) False nrip2
XR_005638075.1 other upstream 198183 7323070 ~ 7332259 (+) True amdhd1
TU307013 other upstream 209393 7318540 ~ 7321049 (+) False snrpf
unassigned_transcript_1480 other upstream 383102 7147269 ~ 7147340 (+) True trnaw-cca_35
XR_005638177.1 other upstream 2157239 5283759 ~ 5373203 (+) False abcc9
TU307294 other downstream 894671 8426691 ~ 8432697 (+) True rps16
XR_005638164.1 other downstream 1602574 9134594 ~ 9173220 (+) True lhfpl3
TU307644 other downstream 1705244 9237264 ~ 9241349 (+) False ndufb2
unassigned_transcript_1481 other downstream 2660306 10192326 ~ 10192412 (+) True trnay-gua_57
unassigned_transcript_1482 other downstream 2662410 10194430 ~ 10194516 (+) True trnay-gua_58

Expression Profile