RNA id: XM_039791255.1


Basic Information

Item Value
RNA id XM_039791255.1
length 687
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC120553156
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 7566655 ~ 7569303 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAATGACTGCACATTATGTTTAATCCTGCTCTCTACATCTGCCTAACCCTTTTTTATTGTGCTCTGTCTTTACAGTTGTATTGGTTCACTGTGGAGTTTGGCCTCTGCAAGCAGAACGGAACAGTGAAAGCTTACGGCGCCGGACTCCTGTCATCTTATGGAGAGCTTGTTTACGCTCTGTCTAATGAGCCGGAGTACAAGCCGTTTAACCCGGAGGAGACAGCAGTGCAGCCGTACCAGGACCAAACATACCAGCctgtttactttgtgtctgaaAGCTTTGAGGATGCAAAGACTAAGATGAGGAGATACTCTGCAACCATCAAGCGCCCCTTTGCAGTTCGCTACGACCCCTTTACCTGCAGCGTGGAGGTTCTGGATCAGCCCGGCAAGATCCAAAACGCTCTGAGCCAGATGAGAGAAGAACTGAAGACCCTTCACAGCGCCTTGGAGACATTCAGCTCATCTTAGGACCGGGAACAGATtttctgcagagagagaaaaggatgaACATTTCAACATTGTATAAGAGATCTACTAATACGAACACAAAGGCAATCAAAATGTAGTCAGGTTTGTGAGGTTCCACATGGCTAATTGTTTGCATGTATaatttatgtaaaaagaaatacatgtttattttcatgagtctcaaaacatttcagagaaaagtATTAAgatacttta

Function

GO:

id name namespace
GO:0042423 catecholamine biosynthetic process biological_process
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005506 iron ion binding molecular_function
GO:0004511 tyrosine 3-monooxygenase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307093 lncRNA upstream 34635 7530442 ~ 7532020 (+) False LOC120553154
TU307039 lncRNA upstream 140485 7425057 ~ 7426170 (+) False ascl1a
TU307033 lncRNA upstream 198487 7367376 ~ 7368168 (+) False klhl42
TU307019 lncRNA upstream 220493 7335054 ~ 7346162 (+) True G226352
TU306969 lncRNA upstream 294339 7272077 ~ 7272316 (+) True G226319
TU307137 lncRNA downstream 46885 7616188 ~ 7707570 (+) False G226452
TU307138 lncRNA downstream 46885 7616188 ~ 7621731 (+) True G226452
XR_005638193.1 lncRNA downstream 322106 7891409 ~ 7955485 (+) True LOC120553625
TU307206 lncRNA downstream 455058 8024361 ~ 8028661 (+) True G226505
TU307208 lncRNA downstream 478476 8047779 ~ 8057052 (+) False G226507
XM_039791254.1 mRNA upstream 4450 7546428 ~ 7562205 (+) True LOC120553155
XM_039791253.1 mRNA upstream 34578 7525892 ~ 7532077 (+) True LOC120553154
XM_039791251.1 mRNA upstream 42236 7509964 ~ 7524419 (+) True pah
XM_039791252.1 mRNA upstream 140401 7423618 ~ 7426254 (+) True ascl1a
XM_039792100.1 mRNA upstream 166256 7370442 ~ 7400399 (+) True nrip2
XM_039792172.1 mRNA downstream 23576 7592879 ~ 7605838 (+) False LOC120553589
XM_039792174.1 mRNA downstream 23695 7592998 ~ 7605838 (+) True LOC120553589
XM_039791873.1 mRNA downstream 300458 7869761 ~ 7887525 (+) True LOC120553463
XM_039792247.1 mRNA downstream 326242 7895545 ~ 7897483 (+) True tnnt2c
XM_039791580.1 mRNA downstream 408774 7978077 ~ 8012811 (+) True ppfibp1a
TU307011 other upstream 166256 7396494 ~ 7400399 (+) False nrip2
XR_005638075.1 other upstream 234396 7323070 ~ 7332259 (+) True amdhd1
TU307013 other upstream 245606 7318540 ~ 7321049 (+) False snrpf
unassigned_transcript_1480 other upstream 419315 7147269 ~ 7147340 (+) True trnaw-cca_35
XR_005638177.1 other upstream 2193452 5283759 ~ 5373203 (+) False abcc9
TU307294 other downstream 857388 8426691 ~ 8432697 (+) True rps16
XR_005638164.1 other downstream 1565291 9134594 ~ 9173220 (+) True lhfpl3
TU307644 other downstream 1667961 9237264 ~ 9241349 (+) False ndufb2
unassigned_transcript_1481 other downstream 2623023 10192326 ~ 10192412 (+) True trnay-gua_57
unassigned_transcript_1482 other downstream 2625127 10194430 ~ 10194516 (+) True trnay-gua_58

Expression Profile