RNA id: TU307188



Basic Information


Item Value
RNA id TU307188
length 1862
RNA type TUCP
GC content 0.49
exon number 2
gene id G226495
representative True

Chromosome Information


Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 7888571 ~ 7891311 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


CAGACCAGTGGGTGTTTGGTGTCATCCGGCTGCAAGTCTTGAAAACTGATCCACTATGCTTCGTGTCACCACTGCCTCCCTGTGAATCTACTGCCAGAAGATGAGGCTCCTCATCGCTCCCTCTGCCTTCACAGTGcctctcttctccctccctccctctatcaACTGTCAGTGGACATTCGAAAGGTACGGAAGTTCAGGGGATGGGTTCTGTCTGAGtactctgtgtatgtgtcagaAACTGCTGACCTGCTGAGGGACATGGGTGCAGACCCAACAGTGATCGCCCGCATCCTTGAAACACACCCTGAAGCTGTCCTGTGTCGGCCGGATGACGTGGCCGCCCAGTGAGACCTTTGGGTGTCTGTGTGCCCCAACAAGCGTGAATTGATGAGCATCATTGAAAAGTTCCCAGCTTCTTTCTTCACATTAACTCACCATAGCAACCAGCGGGCTAACATCCTTTACCTCCAGAGTCTCCGCCTCAGCAACAGGATCATCGGGGAAGCTGATGGCCAGCGCCCCCGCAGAGCTTCAGTCGACCCGTGGAGCTGAACAAAGAGgtcatccacactctgagggacACCTACCTGGACCTGGGCGGAGATGAGGTCAACCTGCGCATCTGGCTGCAGAAGCTCCTGAGCCAGAACCCGTTCGTCCTGCTGCGGCCGGCTGAAGCCTGGAGGGACAGTCTGGGCTTTCTGAGGTAGCAGGGCTTCACCACAGAGGAGCTCCTCAGCCTGGTTTCAAGCCTCAGAGCCTCCATTGCAGAGCTGCAGCCAGAGGCCATGCAGCAGGCGCTGGCCTACATCGAGGGGGCTCTCGCCTGCTCCAAGGACGAACTCGAGCAAATTGTGATCCGCTGCCCGACCATATGGTACTACTCCTTGCCAACCCTGGCGGGGCGATTCCAAGGACTGATGGATGTTGGAGTGAGCATGGAGCAGGTGAAGGAATCTCCAAATATCCTGGAGCTCACCACGCAAATTGTGCTTTATCGCATCCAGAAGCTGGCCTCCTACGGGTATGACGTGCGCTCTGGAAGCATGGACGTTATTGTGGGAACTAAGAAGGACTTTGAGATGAGTTATGGCAAGCTGCACCGCAGGCAGCAGCGGCCACTCTTCAACCCTGTAGCTCCCCCTCAGATCTGCTGAGGAGTGAATATCAGAATGTGTTGACATGCTGCTGTTACACAGCGAGGATGTGTGGGAGAAACGTTTTGTGAATTTTATTTGATGCTGATTTTGGGAACgggttcaaaactttgtgcagaAGAAGGGAGGCAGTTTGAAATACCAAACCTCCAGCAATACAGAGAACTTTTTATTATGACACTAATAGGTTTTTAGCCTGTGGCCTTCATCAGGGTTCTTTGATTTGATGCTGAGGCCCAGCGGAGGGCTCTTGTGAAAATATGACACTGTGACTGTTTTGCAATCGTACTCAATTTAAGAAAACAACCAAGGACAGTATTTATTTGACGATTACGTCAGGGAATATATACTGACATACGTTGAAATAGTGATGCGTGGAAATGAGTTGCTAAATTAAGATTTACTACTGTAATTAACTAAATGATTTGTGGTAACTAAACATGATGTGCAATAAATGCCACATTTGCATTTGGTATGTCATTTATAAGTGTCAAAAAGCTGCTTATCTTCTGAGTGAGTTCATCAGAAGAGTCAATCTTTAGAGAAAACATGAATGTCTCCATGTTTACGGTCTAGCAAGTGCAATGGGATTAGTGATTCATACGATGTCGTAATCATAAGTTAAAttgaacccttgtgttgtcttcccttcaaccatgaacttgttgtccatcCAGGTCAAAAGTGAAATTGAAATTATGG

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
XR_005638122.1 lncRNA downstream 331804 7525933 ~ 7556767 (-) True LOC120553157
TU307116 lncRNA downstream 331833 7552858 ~ 7556738 (-) False LOC120553157
TU307096 lncRNA downstream 376107 7509914 ~ 7512464 (-) True G226417
TU307055 lncRNA downstream 567376 7319530 ~ 7321195 (-) True G226384
TU306995 lncRNA downstream 618148 7269854 ~ 7270423 (-) False usp44
TU307393 lncRNA upstream 457806 8349117 ~ 8357438 (-) True G226654
TU307394 lncRNA upstream 458391 8349702 ~ 8351174 (-) True G226655
TU307399 lncRNA upstream 535426 8426737 ~ 8427606 (-) False G226658
TU307400 lncRNA upstream 535426 8426737 ~ 8429906 (-) True G226658
TU307402 lncRNA upstream 535426 8426737 ~ 8427606 (-) False G226658
XM_039791618.1 mRNA downstream 21937 7655004 ~ 7866634 (-) True LOC120553325
XM_039791471.1 mRNA downstream 238668 7642649 ~ 7649903 (-) True LOC120553252
XM_039791470.1 mRNA downstream 254633 7616234 ~ 7633938 (-) False igf1
XM_039791469.1 mRNA downstream 254635 7616234 ~ 7633936 (-) True igf1
XM_039792176.1 mRNA downstream 277323 7578735 ~ 7611248 (-) True nup37
XM_039792243.1 mRNA upstream 19689 7911000 ~ 7923181 (-) True syt10
XM_039792242.1 mRNA upstream 19689 7911000 ~ 7923180 (-) False syt10
XM_039792241.1 mRNA upstream 19689 7911000 ~ 7923180 (-) False syt10
XM_039792246.1 mRNA upstream 19689 7911000 ~ 7923179 (-) False syt10
XM_039792244.1 mRNA upstream 19689 7911000 ~ 7923179 (-) False syt10
XR_005638120.1 other downstream 394264 7426600 ~ 7494307 (-) False LOC120553151
XR_005638119.1 other downstream 394264 7426600 ~ 7494307 (-) True LOC120553151
XR_005638121.1 other downstream 394268 7426600 ~ 7494303 (-) False LOC120553151
TU306891 other downstream 799504 7086947 ~ 7089067 (-) False meig1
TU306880 other downstream 802602 7075900 ~ 7085969 (-) False tmem243b
XR_005638147.1 other upstream 673931 8565242 ~ 8793910 (-) False ppfia2
XR_005638142.1 other upstream 673931 8565242 ~ 8754830 (-) False ppfia2
XR_005638144.1 other upstream 673931 8565242 ~ 8754829 (-) False ppfia2
XR_005638143.1 other upstream 673931 8565242 ~ 8754829 (-) True ppfia2
XR_005638145.1 other upstream 673931 8565242 ~ 8685938 (-) False ppfia2

Expression Profile


TU307188 Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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TU307188 Expression in each Bioproject

Bar chart with 8 bars.
TU307188 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 50.
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