RNA id: TU307208


Basic Information

Item Value
RNA id TU307208
length 2746
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G226507
representative False

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 8047779 ~ 8057617 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACCTTGAAAGTGAACTGCTCATTGAAGACAGGATTCAGGGTCTTCCTGTGGACCTTGGTctcaaacttcttcttcttgtccGGCAGCAGGTAGACCTTTACGTATGGGTCAGATGTGCCACCCATGTCCATAGCAGGCAGCTCTGCGGCCTGGATGATCCCCACCATGAGCGTATTCTCGGTGAAATTGTAATCCAGGGAGTATTGTAATTTGCCCAGTTTCTGGTCCTCCTTGGGCTCTGCCTCTTGCTCCGTTTCAGTCAGCCCTGTCTCCGCATCCTCCTCATCCTTCAAGGCCTGAAGGAAACACCCACCAAGAGTCAGTGTCGCCAGTTTCTCGTTGGTGCTAGCACCCAGCCAGCCGTTCCCCGCCCAGGTCCTGCCAGTGGACCTACTCCTGTAAAAGCTGCCACTTGTTTTATGGTGTATAAGGGGGAAAACAGGGGGGGGAGCAAGCACTAAAACACAATAGCAGTTAACACCAGGACATGCTTTGTGATGCACTAAAGCCCCGGGCCTGGTCCCCTGATGATGCTTTTCTATCAATCTCTGGTTGTTTCTGTCTAAAGGGAGGAAAGATCAAATGATGTCGCCAGAGATGTGAGCGATGGGCAGGCATTAGAGGGGGAGAAGAAGGGGGAGGAGGGtagagagaggacagaaagaaggagagagaagatgCTTCCGGAAAAGATTACTGTAAGACAATTCCCTTGATGTTATTTCAGGCAGATCAAGTCTCTGGCAAAAACACATATCAACTGGGAAGAGTCTGAAGTGGCAGAGAGTGAGAAGTGAAGTTGCCTTTTTCGCTAGCCTGGCACTGAGGTAAGGGTAGCAGGTGGTGGCATTGGTGGTGGGTAGAGGAAGGGTGGTGGGGTGGAGGAGTTTGTTATAAGACCAACATGCGATTGAAGAGGCAAAGACTAGCTCTCAGGGTCATTCATTCAGCGTCAAAAGTTGCCTTCCAAGTTATCTCTTTCGTTAGGCATGCAGAGCATTCTCTGTCGTACAAACCAGTGCTCTCGTGATTACGCCCTCAAGACATACAGTCACATTGTCAACATAACCCCTAAAGCTTTTATGCTATCCCCTACGTCGATGGTAGCTAGAAGCATCATGCCAGCAGTGGGTGGGTAGGTGTTGGTAAAAAGGGTTGTAATGTACATCGGGGCCTGCTCCTATTAGTTTGTCAAGTTGCTCATGTGGAAGCAAAAGGCTGAACAACACTGACTGGTTTTCAAATGTTCCGCTGAGCCACTTTGGTCTCTGCCTTGTGGGAGCAAATTCGAATTGAGTGGTTTTTAGAGAGAAAAGTGGAGTAGGTTAAAATGATTgaagaaatattttattaaacatGTAATTTATATGATTTTATAAGGTTAATCCAATGTCCCCACATCTGTGTTCCAGGAAAGGTACGATCTGTTTCACCTGGCTTGACAGATGTGAATGCTACTGTAAGTCAAAAGCTTCCTTTTCATTACCAATCAATCCACGTTTGCTCGCTGCCACTCGTTTGAAATGTAAATTAAAGATTCAAAAGGCAGGAGACTTCAGCTCGGCACAAAAAAATCAGCATCGTTCAACCTTGTCAATGCGCACCCAGTGTTTCtttcatacatatatatgtgcaTATGCAAGttgtacacacatatatacagcagatatacatgtactgtatgcgtAGTTACATATATTTGGGAGTAAGTTGTCAAgaggctataaaaaaaaaaaacacatcagagCAGCAGGCTTAAGAAGATCCAACAGCAATTGGGAACCTACCGCCAGTGACCATCCCGAACAGTCATCAGACACAACACAGATAAGGAGGACATAGAAggaagaaacacaaattaaaacaaccacacacaggaATTAACACACCAGAGTCTGGGCACACCAGGAGAAATGACCGCTTGCCTCGGAAGTGGCAGATTCACCGATCTGAGAGATTAGTTATTAGGGCAACCAATAACAGGTCGTTTATTTTGATTAATGgctatttgaaaataaaaattagaTGTTCTAAGGCAGCCAGAGTATTTGAAATTAATGGAAAATCTTCTCCTTTAAAAAGCACAAGTGATGTGCTGTGCTGCAGGTATTTGACTGACCTTGCTGGTTGGTAACGCTGTTCTCTGTTACATGAGAAAATAAACTAACTAAAAGTCTAAAAGGCATTTGAATCTTAATTTATGCTTTCTTTTACAGTAAGTAATGAAGTATGAAAACAGTGTCAGTGGTTTCTGTATTTGATTCGATTCGGATCTATGTCTGATGGCAGAGGTGTTGCAGCAAATTAAACACACTTTGTACACGATTCCACCAAGGACAGCGGTATAATGATGCTCCGCTGGTGCAATTAGTGTGCTAACTCCATTTGAAGTGTCAGGGTTTCATTGCTTCCCGTTCTGTACTGTTGAAAGGTAGAGTATAATCACATTCCCTCCCATTTGTTTTATCGTTTGGTGATGTCATTTCTCTGGGTGGATACCACTTTATTACACGGCAAACCTTACTCACACTCTTTAACATGTAAGCGGGTCCTTAtaagacaaaaagaaacacaGGAACAGGAACaaaaagtaggagaaaaaagagCGATTGAAATACTCTTCAATCTGAAGCCATTTAAATGACTTCCATTAACTCTCCTGTAAtaagactgaaatatttttttaattaagtggTAAAATATCATCCTAggtaatactgtatgtatttctttGGCAATGATTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307206 lncRNA upstream 19118 8024361 ~ 8028661 (+) True G226505
XR_005638193.1 lncRNA upstream 92294 7891409 ~ 7955485 (+) True LOC120553625
TU307137 lncRNA upstream 340209 7616188 ~ 7707570 (+) False G226452
TU307138 lncRNA upstream 426048 7616188 ~ 7621731 (+) True G226452
TU307120 lncRNA upstream 478577 7566730 ~ 7569202 (+) False LOC120553156
TU307219 lncRNA downstream 203281 8260333 ~ 8262877 (+) True G226515
TU307221 lncRNA downstream 203281 8260333 ~ 8306828 (+) False G226515
TU307275 lncRNA downstream 284578 8341630 ~ 8343803 (+) True G226554
TU307276 lncRNA downstream 284578 8341630 ~ 8408659 (+) False G226554
TU307280 lncRNA downstream 299278 8356330 ~ 8359282 (+) True G226556
XM_039791585.1 mRNA upstream 34968 7978077 ~ 8012811 (+) False ppfibp1a
XM_039792276.1 mRNA downstream 369583 8426635 ~ 8429716 (+) False rps16
XM_039791157.1 mRNA downstream 405272 8462324 ~ 8464094 (+) True myf6
XM_039791202.1 mRNA downstream 411609 8468661 ~ 8471034 (+) True myf5
XM_039791529.1 mRNA downstream 458536 8515588 ~ 8565355 (+) True acss3
XM_039791532.1 mRNA downstream 745496 8802548 ~ 8807170 (+) True washc3
TU307011 other upstream 647380 7396494 ~ 7400399 (+) False nrip2
XR_005638075.1 other upstream 715520 7323070 ~ 7332259 (+) True amdhd1
TU307013 other upstream 726730 7318540 ~ 7321049 (+) False snrpf
unassigned_transcript_1480 other upstream 900439 7147269 ~ 7147340 (+) True trnaw-cca_35
XR_005638177.1 other upstream 2674576 5283759 ~ 5373203 (+) False abcc9
TU307294 other downstream 369639 8426691 ~ 8432697 (+) True rps16
XR_005638164.1 other downstream 1077542 9134594 ~ 9173220 (+) True lhfpl3
TU307644 other downstream 1180212 9237264 ~ 9241349 (+) False ndufb2
unassigned_transcript_1481 other downstream 2135274 10192326 ~ 10192412 (+) True trnay-gua_57
unassigned_transcript_1482 other downstream 2137378 10194430 ~ 10194516 (+) True trnay-gua_58

Expression Profile