RNA id: TU307510


Basic Information

Item Value
RNA id TU307510
length 521
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G226716
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 9012142 ~ 9012662 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCATgcaggaaacattattttatgcTTAAACAGAATATAATTTAGTGAACTGATGGCTCGAGAAGTGCTCTCCAACTGACCAGTACAGAACAATAGATAGCTCCTATAGTTCCTCATCTGCGTCACAGACTgcgatattgtttttttaaaagcaatcCTACTTCTCTTTCTAAATTTATAGAGCCCCACCTCTTTAATATGCAGCTCCACAACATGCTGTCTCCCCTCCCCTTTTCCAGTACTTGTGTTGGGATATTTCTGGGGAGGGGACATCTGCAGAGTTAGTGCAGTGGGTGAGGAGCAGGCAGAGCAGAGTCACGCAAGGCCTCACCTCTCCTGCTGCAGGACGGCACCCCTGCCATCCTCAGGATGTGCcctctactgctgctgctgctgctgcgcacTTCTGCGCACTGCTGCGCACTGCCCCAACCCCAATCACCTCTCATCACCAGTATCACCTGCTGCTCAAATGTCTATGACGCACAGATCGATTCATAACAGTATTTTTCTAACAGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638190.1 lncRNA upstream 68605 8941841 ~ 8943537 (+) True LOC120553611
TU307514 lncRNA upstream 76591 8935050 ~ 8935551 (+) True G226720
TU307374 lncRNA upstream 128465 8881817 ~ 8883677 (+) True G226641
TU307369 lncRNA upstream 141431 8870018 ~ 8870711 (+) True G226638
XR_005638149.1 lncRNA upstream 391647 8617814 ~ 8620495 (+) True LOC120553277
TU307511 lncRNA downstream 181 9012843 ~ 9013646 (+) True G226717
TU307544 lncRNA downstream 2953 9015615 ~ 9015901 (+) True G226747
TU307545 lncRNA downstream 3411 9016073 ~ 9016275 (+) True G226748
TU307553 lncRNA downstream 25111 9037773 ~ 9039826 (+) True G226755
TU307627 lncRNA downstream 166477 9179139 ~ 9204451 (+) True G226810
XM_039792293.1 mRNA upstream 1955 9006558 ~ 9010187 (+) True LOC120553653
XM_039792424.1 mRNA upstream 79165 8927072 ~ 8932977 (+) True LOC120553730
XM_039791812.1 mRNA upstream 85346 8918234 ~ 8926796 (+) True atp6v1e1b
XM_039791533.1 mRNA upstream 167117 8818570 ~ 8845025 (+) True gnptab
XM_039791534.1 mRNA upstream 167117 8818570 ~ 8845025 (+) False gnptab
XM_039792055.1 mRNA downstream 4424 9017086 ~ 9020129 (+) True fgf23
XM_039791611.1 mRNA downstream 74511 9087173 ~ 9089548 (+) True llph
XM_039791818.1 mRNA downstream 104143 9116805 ~ 9119985 (+) True guca1a
XM_039791817.1 mRNA downstream 121932 9134594 ~ 9170380 (+) False lhfpl3
XM_039792211.1 mRNA downstream 224564 9237226 ~ 9241346 (+) True ndufb2
TU307294 other upstream 579445 8426691 ~ 8432697 (+) True rps16
TU307011 other upstream 1611743 7396494 ~ 7400399 (+) False nrip2
XR_005638075.1 other upstream 1679883 7323070 ~ 7332259 (+) True amdhd1
TU307013 other upstream 1691093 7318540 ~ 7321049 (+) False snrpf
unassigned_transcript_1480 other upstream 1864802 7147269 ~ 7147340 (+) True trnaw-cca_35
XR_005638164.1 other downstream 121932 9134594 ~ 9173220 (+) True lhfpl3
TU307644 other downstream 224602 9237264 ~ 9241349 (+) False ndufb2
unassigned_transcript_1481 other downstream 1179664 10192326 ~ 10192412 (+) True trnay-gua_57
unassigned_transcript_1482 other downstream 1181768 10194430 ~ 10194516 (+) True trnay-gua_58
unassigned_transcript_1483 other downstream 1182458 10195120 ~ 10195206 (+) True trnay-gua_59

Expression Profile