RNA id: TU307545


Basic Information

Item Value
RNA id TU307545
length 203
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G226748
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 9016073 ~ 9016275 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgtgttccaacaatacttttatacaagcAGAGGGGTTGTAAGTAACCCAGgaaagttggaacacctgtgggaattggtagcaccaactttcaaagcttgatcaacctccattgctgcagaacagcctctacattgttaacccatttcttgttccctgaaaaaggcctttttgtaaatgtctgggtagcttgtgaatttcacc

Function

GO:

id name namespace
GO:0004112 cyclic-nucleotide phosphodiesterase activity molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307544 lncRNA upstream 172 9015615 ~ 9015901 (+) True G226747
TU307511 lncRNA upstream 2427 9012843 ~ 9013646 (+) True G226717
TU307510 lncRNA upstream 3411 9012142 ~ 9012662 (+) True G226716
XR_005638190.1 lncRNA upstream 72536 8941841 ~ 8943537 (+) True LOC120553611
TU307514 lncRNA upstream 80522 8935050 ~ 8935551 (+) True G226720
TU307553 lncRNA downstream 21498 9037773 ~ 9039826 (+) True G226755
TU307627 lncRNA downstream 162864 9179139 ~ 9204451 (+) True G226810
TU307747 lncRNA downstream 634972 9651247 ~ 9654254 (+) True G226885
TU307781 lncRNA downstream 735669 9751944 ~ 9754116 (+) True G226918
TU307786 lncRNA downstream 780198 9796473 ~ 9826525 (+) True G226921
XM_039792293.1 mRNA upstream 5886 9006558 ~ 9010187 (+) True LOC120553653
XM_039792424.1 mRNA upstream 83096 8927072 ~ 8932977 (+) True LOC120553730
XM_039791812.1 mRNA upstream 89277 8918234 ~ 8926796 (+) True atp6v1e1b
XM_039791533.1 mRNA upstream 171048 8818570 ~ 8845025 (+) True gnptab
XM_039792055.1 mRNA downstream 811 9017086 ~ 9020129 (+) True fgf23
XM_039791611.1 mRNA downstream 70898 9087173 ~ 9089548 (+) True llph
XM_039791818.1 mRNA downstream 100530 9116805 ~ 9119985 (+) True guca1a
XM_039791817.1 mRNA downstream 118319 9134594 ~ 9170380 (+) False lhfpl3
XM_039792211.1 mRNA downstream 220951 9237226 ~ 9241346 (+) True ndufb2
TU307294 other upstream 583376 8426691 ~ 8432697 (+) True rps16
TU307011 other upstream 1615674 7396494 ~ 7400399 (+) False nrip2
XR_005638075.1 other upstream 1683814 7323070 ~ 7332259 (+) True amdhd1
TU307013 other upstream 1695024 7318540 ~ 7321049 (+) False snrpf
unassigned_transcript_1480 other upstream 1868733 7147269 ~ 7147340 (+) True trnaw-cca_35
XR_005638164.1 other downstream 118319 9134594 ~ 9173220 (+) True lhfpl3
TU307644 other downstream 220989 9237264 ~ 9241349 (+) False ndufb2
unassigned_transcript_1481 other downstream 1176051 10192326 ~ 10192412 (+) True trnay-gua_57
unassigned_transcript_1482 other downstream 1178155 10194430 ~ 10194516 (+) True trnay-gua_58
unassigned_transcript_1483 other downstream 1178845 10195120 ~ 10195206 (+) True trnay-gua_59

Expression Profile