RNA id: TU307786


Basic Information

Item Value
RNA id TU307786
length 1874
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G226921
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 9796473 ~ 9826525 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttatttctgttttacatACTTTTTGTCACAACAAAGTCAGCAAGAGCATGTTTTGTCCATTACATAGTAGTAATTCATTTGAAAGCAACCAAGAGAGGACCAGCGACCATTTCATAGCATAAAAGCAAAGGCAATTTTGTCATGCAGCAAAACAGGCAGGGCTTCTAACCAATTCCAAGGCAAGGGGAATGCTAACAGCCCCCACCATCCAGTTTCAACTCTAACCCCCATTTACCCATCATTCAGAGCCCCCAGAGCCCATCAATTACAAAATACACAGAGAAGCTgcaacaaaaaacatatttttgctcTCACTCCAGGGATGACAAAAATAACCTATCTAGAATTGCTTATTCTATTATGTGCTGTTAACATTGTTTCGAAAAGGGATTCACTAACCAATTTTAAAATTGCAACATTCAAGTCTTTCTAGTTAACCAGCATGATGATTGGTCAAAGAATACAGAATATCATTAATGCATGACCAACGTAAAATTTGTCAAAAACACGATTTGATATGTAAGTGATATGCTGAATAGAAAAGGAAAATTCAACCCCTGGACCTCTCTCAACCAACctttccaaaatgaaaaaaaaaaaaaaaattggattggAGGGACTGGTGTGGtctattaaaaaagaaatcaagttAGAGGACGAGGCCACACATATTGAAAGGTTAATATAATGTGTTCTACAACCTCTCTTTTCAATCCATCAAGTACAGTACAGTGCAATTACTGTTCATTTCGTGGGATTAAGCCCTGGCCATACAATACTTATATTGAAGTTGTAAAAAAATTGTTAACACACTATTGATCTATTACCATTTGATTTGCAAGAGAGAACTTCAAATGAGAGATGTGTATTTAAGTGCTAAGCTTTGCGTTTACATTACAGAGTGTGATTTCTAGTCTGAGCAGAGTTCTAGGATCCAGGTGCGAGAAGGCTCCCCCAGTGTTTGGTCCCTAAGGGAGAAATAACTGACAAGTCCTTCTGTTAAACGGCTACAAACAGAGGCCAAAACAAGAGAAAATCCTATCCCAAAAacttgggaaaaaaacaaaacaaggtaAAGGAAAATCACCAGACGGACACAATGACCCtccaacaaacagacaaaagcaGTGGTAAGGGTAAAAGAGGCGAGTCCATCTTCTGTCAGGGGACCACTGCATCCATCTGTCTGTCCATTCACCCACCTCCAACACTGTGCGGTCTCACTTGAGCAGAGCCTTTATGGCATCGTCCTCGGCAGCTTCAAAGGCACTGATGCCGTCCGGTCCTTTTCGGTTTTTGTCAGCTCCCTTTTCTAGCAGGACCTTGACACAGGAGGCGTGACCCTCGAAACAGGCAGAGATCAGTGGAGTGAGCCCATGTTTGTCTGGAGCATTAATATCTGCTCCCTTAGAAATGAGGTACTCCACCACATCTGTCTGACCAAAGTCTGCAGCATAGTGCAGAGGCTTCCTCCCACCTTCCAAGGTCCGGTTTACATCTTCAGCCGTTACTAGTTTGGCTTCCACCTCATCGAGGTCTCCGGTCTTCAATGCCCACATCAATTCTTTATCTCCCATTTTCCTGTCTTTGCTCCGGTGTTGCTCCTTCCCTGTTATGCTGCAGGGCAGTTGTCAAGTTAAATGCTAGCTAGTGCGTTAAAGTTAGCTAGCCAGCTATAGCTTGAAAACTCCTCCTGTCGTCGTGGTAAGTAAGGTTGCAGAACTCGACTGAATAAAATGTCGTTCCAATACTTAAGAAAACGATTTTTGTTGGATTTGGCGTGACCCGCCGAGGAATGGCAGGTAAATACAGGCTCAAAAGAAGTTCTGAAAGGCAAAGTAGCTGAGAGGGATCCGCCTTTCTGCAAGCTAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307781 lncRNA upstream 42357 9751944 ~ 9754116 (+) True G226918
TU307747 lncRNA upstream 142219 9651247 ~ 9654254 (+) True G226885
TU307627 lncRNA upstream 592022 9179139 ~ 9204451 (+) True G226810
TU307553 lncRNA upstream 756647 9037773 ~ 9039826 (+) True G226755
TU307545 lncRNA upstream 780198 9016073 ~ 9016275 (+) True G226748
TU307795 lncRNA downstream 41050 9867575 ~ 9868085 (+) True G226930
XR_005638107.1 lncRNA downstream 107650 9934175 ~ 9936593 (+) True LOC120553125
TU308026 lncRNA downstream 711671 10538196 ~ 10538689 (+) True G227088
TU308047 lncRNA downstream 798921 10625446 ~ 10627982 (+) True G227107
TU308048 lncRNA downstream 802283 10628808 ~ 10630212 (+) True G227108
XM_039791883.1 mRNA upstream 116658 9673991 ~ 9679815 (+) True cd36
XM_039791669.1 mRNA upstream 522565 9268198 ~ 9273908 (+) True LOC120553346
XM_039791670.1 mRNA upstream 522565 9268198 ~ 9273908 (+) False LOC120553346
XM_039791672.1 mRNA upstream 522565 9269069 ~ 9273908 (+) False LOC120553346
XM_039792211.1 mRNA upstream 555127 9237226 ~ 9241346 (+) True ndufb2
XM_039791601.1 mRNA downstream 126075 9952600 ~ 10029904 (+) False chrm2a
XM_039791603.1 mRNA downstream 126669 9953194 ~ 10029904 (+) False chrm2a
XM_039791602.1 mRNA downstream 127402 9953927 ~ 10029904 (+) True chrm2a
XM_039791146.1 mRNA downstream 274171 10100696 ~ 10103605 (+) True LOC120553071
XM_039792487.1 mRNA downstream 278406 10104931 ~ 10107323 (+) False LOC120553783
TU307644 other upstream 555124 9237264 ~ 9241349 (+) False ndufb2
XR_005638164.1 other upstream 623253 9134594 ~ 9173220 (+) True lhfpl3
TU307294 other upstream 1363776 8426691 ~ 8432697 (+) True rps16
TU307011 other upstream 2396074 7396494 ~ 7400399 (+) False nrip2
XR_005638075.1 other upstream 2464214 7323070 ~ 7332259 (+) True amdhd1
unassigned_transcript_1481 other downstream 365801 10192326 ~ 10192412 (+) True trnay-gua_57
unassigned_transcript_1482 other downstream 367905 10194430 ~ 10194516 (+) True trnay-gua_58
unassigned_transcript_1483 other downstream 368595 10195120 ~ 10195206 (+) True trnay-gua_59
TU308063 other downstream 870729 10697254 ~ 10699718 (+) True G227121
TU308097 other downstream 905544 10732069 ~ 10737503 (+) True G227141

Expression Profile