RNA id: TU307910


Basic Information

Item Value
RNA id TU307910
length 2112
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G227019
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 10218086 ~ 10220450 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTGTGAAAGCTCCTCAAaccgtcatttatcagtctgattgttacccctctcagtggcagctcctccacccatatctttataacggagctaaccgctaaccgactaaccgctaatcagagctagctcgttgccaaccgagccttcagttctgcgtgcctgtatccattaactgcatgtatggactcgagcccaaacaaaacccttcattttattaaaatggcggcgaaaagttttaaacttcaactcagaattgtttgaatgacagagatcagctcaaggtacagtgtagcgttagcgtgctaagttgatgctttctctgcgtagtgcagactgatttgctcttgcgagtcatcaaatcgagaccaaatcgcagcctttgcgattaggaaatcgcgttttaacatatcgcgatattatcgcaaatgcaattaatcgttcagccctacttcAGACAATCGAAAAAAGAGCAAATAAGTGATAcggatgattaaaaaaaactactaaaaCTACAATCAAAATAAGGCACCAACCTTCACAGGTGAAGTCTTTGTTTGGCCCTCAGTGCTCTGTGGCTATAGAAAGATAATCTTAATTGTTGCAGATTTAACCTAGCCAGACCCTATACATAAACAAGACCCACCAGTTACGCCCAAAGATGTAGGAAATGACAGGAAAACAATGTGCTGTAAATGCAGGAGCGGGGAGAGGCAGTCCACATTCCCAAGTTCAGGGGTCAAATGCTTTCCATGCCTGACATTCCCTTTGTTGACTCCCATACACACTTCTCTAATGCTCTCATGATTTCGGCATGTACGCACCATTTCCTACTGATGTCTGAATAAGGGGAGATTTGCCAGAACACAGGACAGGATAATCACAACTAGCCTCACTTAAAATTctgaacaatagatatgacacaCATAGCAACTTCTACTATTAGCCCAACGATGCAAAACTGTAATTAGCTTTTTCACCGAGATGACGGATGAGAAGTTTTTATCTTAATCAGATCAGTTTGTTGTCATTTCCATTTAACCACTGTTATGTCCTTGTTGCTGTTGCCACAACACCAGAGACAAATATGTTTGCAGGGAACTGCAAACTAAGTTCTTATCTCATCTTGTCTTAAAAAGATTACACCATGCTATTAAAAACTACCAATCAAACATTAAGCGTCTATAAACCAGTCCAAACCAGTGACAAACCATGTTTATCagtcttattatttttttgctaACATTCACATACTTCAATCTCAAACAAGTTTGTGAATTATACTTTTTCtgtcataaaaaaacatattatttaGCTGaactttcatttaatattttcttttaatctttgtGTTAATCACAAACTTGCTCAATCCAGGTTTGTCTTGAACACTAATCTGGCCTTCTTTAAACTTCCCAGTACCAATATTCATGCCATAAAAGGGCTCCATGTGTGTGAGTAATATTTTTCCATCTTAATTTTTTGGATTGCTTTCAACTATGTACCAGCCGACTCGTGGGGATGAATTCTTTCCCAACAAACTGTAACAAAATGTTTACGGTTGCCATGGAAATGGCGGGACAACTAGACGTCACTCCCGGAGCTTCCCCTATGTAGCATTTTACAAGCACCTCCTTAAGAGGAAGACACCAGGTGTTGTGCGCTCGATTTCATCTGATGTTATGTGGGGAGTTTGGATGAGGAAGTCAGAGAGTGAGtaagagagtgtgtttgtgcggGCATTACAAAACACAAGCTCAGTTTTCTGTGTGTTCATTAGAGACAGTAAAAGTGAGTCAGTGAGCGACCAGATGTCTACCTGCTGCTGGTCTTGGCAGGCTGAACTGGCTGATCTGACCCAGTTTGACTGATGCCCGTCAGTGTGACGCCCTCTGAtggcttcttcttctctcgTCTGCTGAGGGTTCGGTTCAGGTCTATGGACCAGTCCTGTACAGTGCAGGCCTGATAAGATGAGAGACAACCATGTACAGTATCCATCACCTGTTGAAAGAAACAGAGCACCAAGGAGTCTCCCCTCCACCAGAGGCTGACCAGAGAGAGTGGAGCAAAAGAGAGACCATAACAGCaacacagtttatttttttggtatACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU307780 lncRNA downstream 475526 9742004 ~ 9742560 (-) True G226917
TU307615 lncRNA downstream 1098115 9116810 ~ 9119971 (-) True G226803
TU307611 lncRNA downstream 1178229 9037771 ~ 9039857 (-) True G226800
TU307604 lncRNA downstream 1188716 9029046 ~ 9029370 (-) True G226797
TU307592 lncRNA downstream 1248188 8969389 ~ 8969898 (-) True G226787
TU307912 lncRNA upstream 506 10220956 ~ 10284085 (-) False G227020
TU307914 lncRNA upstream 3044 10223494 ~ 10225897 (-) True G227021
TU307913 lncRNA upstream 53882 10274332 ~ 10284085 (-) True G227020
XR_005638174.1 lncRNA upstream 289281 10509731 ~ 10537837 (-) True LOC120553506
TU308027 lncRNA upstream 317754 10538204 ~ 10538416 (-) True G227089
XM_039792083.1 mRNA downstream 31113 10183285 ~ 10186973 (-) True bik
XM_039791578.1 mRNA downstream 64932 10147639 ~ 10153154 (-) False si:ch73-352p4.8
XM_039791577.1 mRNA downstream 64932 10147639 ~ 10153154 (-) True si:ch73-352p4.8
XM_039791579.1 mRNA downstream 64935 10147639 ~ 10153151 (-) False si:ch73-352p4.8
XM_039791572.1 mRNA downstream 77380 10138942 ~ 10140706 (-) True rhno1
XM_039792478.1 mRNA upstream 22222 10242672 ~ 10247265 (-) True ckap4
XM_039791995.1 mRNA upstream 43535 10263985 ~ 10264705 (-) True LOC120553502
XM_039791796.1 mRNA upstream 343980 10564430 ~ 10623168 (-) False apaf1
XM_039791797.1 mRNA upstream 343980 10564430 ~ 10623168 (-) False apaf1
XM_039791795.1 mRNA upstream 343980 10564430 ~ 10623168 (-) True apaf1
unassigned_transcript_1485 other downstream 21653 10196347 ~ 10196433 (-) True trnay-gua_61
unassigned_transcript_1484 other downstream 22216 10195784 ~ 10195870 (-) True trnay-gua_60
XR_005638147.1 other downstream 1424176 8565242 ~ 8793910 (-) False ppfia2
XR_005638146.1 other downstream 1463254 8572959 ~ 8754832 (-) False ppfia2
XR_005638142.1 other downstream 1463256 8565242 ~ 8754830 (-) False ppfia2
TU308019 other upstream 293044 10513494 ~ 10522962 (-) True G227082
TU308180 other upstream 759748 10980198 ~ 10981259 (-) True G227197
XR_005638189.1 other upstream 1403559 11624009 ~ 11676832 (-) False pcloa
XR_005638137.1 other upstream 1618494 11838944 ~ 11848941 (-) False cracr2ab
TU308500 other upstream 2064476 12284926 ~ 12288154 (-) True G227429

Expression Profile